Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq2387 123 5e-23 >seq2387 Length=643009 Score = 123 bits (136), Expect = 5e-23 Identities = 403/617 (65%), Gaps = 23/617 (4%) Strand=Plus/Plus Query 248802 CGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCT 248861 || || |||||| ||| | ||||||| ||||| || ||||||| || || || | Sbjct 86538 CGACAGAGATTTCTCCTACAACTTCTTTGGCTTCAAGACTCTGGAGAGGTCCTACCTGTT 86597 Query 248862 CAAAATTGATGGCAAGATCGTGG---AACGAATTCAGCACATGTTGATGCGAGTGGCTGT 248918 || || | ||| | |||| | || |||||||||| | ||| |||||||||| Sbjct 86598 GAAGATCAA---CAATAAAGTGGCCGAGCGGCCTCAGCACATGCTAATGAGAGTGGCTGT 86654 Query 248919 CGGGATTCACAAGGATGACATAGAGAGCGTGC-TCGAGACGTACACC--GGAATGAGTGA 248975 ||| || |||| || || ||| ||| | ||||||| |||| | | | || || Sbjct 86655 CGGCATCCACAGAACAGATATCGAG-GCGGCCATCGAGACCTACAACCTGCTCTCAGAGA 86713 Query 248976 ACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCT 249035 | ||| | || || ||| | || || |||||||| || || ||| || ||||| Sbjct 86714 AG--TGGTTCACCCACGCCTCTCCTACACTCTTCAATGCTGGAACCAACAGGCCACAGCT 86771 Query 249036 GAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCT 249095 | | ||||| || || |||||| | |||||| |||| ||||||||||||||||| Sbjct 86772 GTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTATGACACGCT 86831 Query 249096 TAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACAT 249155 || ||| || || || |||| || || |||||||| | | ||| | ||| Sbjct 86832 GAAGCAGTGCGCCCTCATCTCCAAATCGGCCGGAGGAATCGGCGTGGCGGTCAGCTGCAT 86891 Query 249156 CCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGT---GATGGTATCGTACC 249212 | || ||| ||| ||||| || || ||||| || | | || | || || Sbjct 86892 CAGATCGACGGGGAGCTACATTGCCGGAACCAATGG---CAATTCCAACGGGCTGGTCCC 86948 Query 249213 CCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGCCGAAAG-- 249270 | | || || | | ||| ||| | | | || |||||| ||| | | || Sbjct 86949 CATGCTGAGAGTTTACAACAACACGGCCCGTTACGTCGACCAGG-GTGGCAACAAGAGAC 87007 Query 249271 --GGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGAGTTCCTGGACT 249328 || | ||||||||||| |||| |||||| || | || || |||||||| Sbjct 87008 CCGGAGCCTTCGCCATGTACCTGGAGCCATGGCACTTTGACGTTTTCGACTTCCTGGAGC 87067 Query 249329 TGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGACCTCTTCTACGGCCTGTGGG 249388 |||| ||||||| || || ||| ||||| | || || ||||||| ||||||| Sbjct 87068 TGAAGAAGAACACAGGGAAGGAGGAGCAAAGAGCCAGAGATCTTTTCTACGCCCTGTGGA 87127 Query 249389 TCTCCGACTTGTTCATG 249405 || |||||||||||||| Sbjct 87128 TCCCCGACTTGTTCATG 87144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073714010937344