Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2387 585 3e-162 seq2122 102 1e-16 seq963 96.9 4e-15 seq375 96.9 4e-15 seq52 96.9 4e-15 seq1563 89.7 6e-13 >seq2387 Length=643009 Score = 585 bits (648), Expect = 3e-162 Identities = 1323/1979 (67%), Gaps = 31/1979 (2%) Strand=Plus/Minus Query 62294 CTGAATGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62353 ||||||||||||| | | || | | ||||| ||||| ||| |||| | | ||| Sbjct 88128 CTGAATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCACTCCACAGTCCTCT 88069 Query 62354 CTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCT 62413 ||| || || || | || ||||| || || || | ||||| |||||||| | || || Sbjct 88068 CTCTGTCAAGTCTTTGAGCAGATGAGGATTCACGATCTGGAACTCTCCAGAGAGGACCCT 88009 Query 62414 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62473 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 88008 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 87949 Query 62474 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62533 || || || || ||||| || |||| || | || || || | |||| | | ||| Sbjct 87948 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGAT 87889 Query 62534 TTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNN 62586 || || || || | | ||| | ||| || || | || | | ||| Sbjct 87888 CTTCTCCTTCAGGAGCTTCCAGTCCCACAGGTCAGTGGGCGTCTTCTCCCACATGTCG-- 87831 Query 62587 NNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTT 62646 || || || || || || ||| || || ||| ||||| || || || || Sbjct 87830 -----TACTGGAGGATGCCTTTGCTGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGA 87776 Query 62647 CCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCT 62706 || |||| || | || |||||||| | || |||| || ||||| |||||||||| Sbjct 87775 GCTCGGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCT 87716 Query 62707 TCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGT 62766 | || || || || || | || ||||| || ||| | || || || || | Sbjct 87715 GGGTGTTCAGCAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCAT 87656 Query 62767 CCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTT 62826 | || || || || ||||| || || || || || || | ||| || || | || |||| Sbjct 87655 CAGCCAAACCCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTT 87596 Query 62827 CTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGA 62886 | || | ||||| || ||||| ||||| || || || || ||| |||| ||||||||| Sbjct 87595 CAGGCACCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGG 87536 Query 62887 CCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TATTACAAACATGTTCAATG 62943 ||||| | ||| || ||| ||||| || || | | ||| ||||||| | | Sbjct 87535 TCACATACGCCAGCTTTTTAAAGTCAAAAGTCCGTTCAGGTGTGACATACATGTTGAGAG 87476 Query 62944 CAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAG 63003 | | || ||||||||||| || |||||||||| | | |||| | || || | Sbjct 87475 CGATGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTG 87416 Query 63004 TGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACG 63063 |||| || || || || ||||| || || | || || || || ||||| |||| || | Sbjct 87415 TGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGG 87356 Query 63064 CATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCC 63123 | || || || || ||| |||| ||||| ||||| |||| || || ||||| || | || Sbjct 87355 CGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACC 87296 Query 63124 AGA-CGACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATAC 63182 | | | || ||||||| | | ||| |||| || | |||||| || || Sbjct 87295 ACAGCTGCT-GAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCGTATTTGGTGTAG 87237 Query 63183 AATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATC 63242 | |||||||| |||||||| | ||||| | || || || | |||||||||| Sbjct 87236 AGCTCCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATC 87177 Query 63243 AACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC- 63301 | ||||| ||| || || ||| | ||||| || | || || ||||| || || Sbjct 87176 AGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCG 87117 Query 63302 TATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAA 63361 || ||| |||||||| | ||| || ||||| || ||||| ||||| || || || ||||| Sbjct 87116 TAGAAA-AGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAA 87058 Query 63362 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 63421 | | || ||| | ||||| || |||| ||| ||||| | |||| || | ||||| Sbjct 87057 GTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTT 86998 Query 63422 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63481 || ||||| || | ||| | || ||||| || |||||||||| ||| || | | || Sbjct 86997 GCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCC 86938 Query 63482 GTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGA 63541 ||| || | |||||||| |||| || |||| || | | | || || | | Sbjct 86937 GTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCGC 86878 Query 63542 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGAT 63601 | || ||||| || ||| ||| ||||| | ||||| | || | ||||||||| || Sbjct 86877 CACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAAT 86818 Query 63602 GCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGT 63661 |||||| ||||| || || ||||| || || || ||||| |||| || | | | Sbjct 86817 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTT 86758 Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||||| ||||| || | |||||||| ||||| || ||||| || || || || || || Sbjct 86757 GGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAACCACTTCTCTGAGAGCAGGTT 86698 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAA 63781 ||| ||||| || || | || ||||| | || || || || || || | ||||| Sbjct 86697 GTAGGTCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCCACTCTCATTAG 86638 Query 63782 CATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63841 |||||||||||| | || | | ||| ||||| || ||||||| |||||| | |||| Sbjct 86637 CATGTGCTGAGGCCGCTCGGCCACTTTATTGTTGATCTTCAACAGGTAGGACCTCTCCAG 86578 Query 63842 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAG 63901 ||| || || ||||| ||||||| || || |||| ||| |||| || | || ||||| Sbjct 86577 AGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCTGAGTTGAG 86518 Query 63902 CTTATCCTTATATTTGTTAACTATATCCATGGTAATACTT-GAAATAATCGGAGAAT--- 63957 || || | | | || || || | ||| | ||| || || || || || | Sbjct 86517 GCGGTCTTTGTTCTCGAGGACGATGTCAAGGGT-CTCCTTGGAGATCATGGGGGAGTGGC 86459 Query 63958 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 64017 |||| || ||| || || |||||| | | |||||||| || ||||| || | || Sbjct 86458 GTTT---GTTCAGAGGGTTGACGTAGTTGTACAGGTCCTCCATGACATCACTGAACACTT 86402 Query 64018 tttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64077 | ||||| || ||||| || || || | ||| || | |||||| || |||||||| || | Sbjct 86401 TCTTTGTCTCTTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCATAGTCTG 86342 Query 64078 GATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTG 64137 | |||| || || ||||||||| || || || ||||| ||||||| || || || | Sbjct 86341 GGTGTTTGGTTGTGAGAGTGGCTGCGATCTCTGCGGCCAGCGTGTCCAGCTCCACTGTGG 86282 Query 64138 TTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGAT 64197 | ||||| | || | || || || |||||||| | || | || || | | | Sbjct 86281 TGACTCCGCTGTACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGGTCCACAAAGT 86222 Query 64198 CCGTGTTTAAGCCATAGCACAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64255 | | ||| | || ||||| || |||| || ||||| |||||||| || |||||||| Sbjct 86221 CAGAGTTCAGCCCGTAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTGTCGAACATGAC 86164 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| || | || || || || ||||| | Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 ||| || || || || || ||||||||||| | ||| |||||||| || | || |||| Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | ||||| || | |||| | ||| ||||||| Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810 >seq2122 Length=1387681 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| || ||||| || | || || ||| | || || |||||||||||||| | ||| | Sbjct 1083632 CCTCATCCCTACTGATCAGCTCATTGGAATAGGTAAGCCCGGGCATTAGGCCTCTCTTCT 1083573 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||| | |||| ||||||||| || || ||||||||||| || || || ||||| | Sbjct 1083572 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCCTCCACAGCTGCAAAAG 1083513 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||| || Sbjct 1083512 CCACAATTCGCTCCCC 1083497 >seq963 Length=229635 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 212701 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 212642 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | |||||| || || || ||||||||||| || || || ||||||| Sbjct 212641 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 212582 Query 33724 C 33724 | Sbjct 212581 C 212581 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||| | || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 212263 TAGGTGTCGATGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAG 212204 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| || ||||| || | ||||||||| Sbjct 212203 CCGTAGAAACACCTGGCCTCAGTCACCTGCACTTC 212169 >seq375 Length=30079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 25675 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 25734 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | |||||| || || || ||||||||||| || || || ||||||| Sbjct 25735 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 25794 Query 33724 C 33724 | Sbjct 25795 C 25795 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||| | || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 26113 TAGGTGTCGATGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAG 26172 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| || ||||| || | ||||||||| Sbjct 26173 CCGTAGAAACACCTGGCCTCAGTCACCTGCACTTC 26207 >seq52 Length=1057507 Score = 96.9 bits (106), Expect = 4e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||||||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 13946 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 14005 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || || | |||||| || || || ||||||||||| || || || ||||||| Sbjct 14006 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 14065 Query 33724 C 33724 | Sbjct 14066 C 14066 Score = 82.4 bits (90), Expect = 1e-10 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||| | || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 14382 TAGGTGTCGATGAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAG 14441 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| || ||||| || | ||||||||| Sbjct 14442 CCGTAGAAACACCTGGCCTCAGTCACCTGCACTTC 14476 >seq1563 Length=18910200 Score = 89.7 bits (98), Expect = 6e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 63266 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATG 63325 |||||||||||||||||| || || ||||| || || | || || ||||| | || || Sbjct 8606310 CACTCGTTTCATAAAGAGGTCTGGGATCCACAGGGCAAAGAACAGGTCTCTGGCCCTCTG 8606369 Query 63326 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63385 ||||| || ||||| |||||||| | || | |||| | | | ||| |||||||||| Sbjct 8606370 CTCCTCTTTACCTGTGTTCTTTTTCAACTCTAAGAACTCAAACACATCGTAATGCCACGG 8606429 Query 63386 TTCCAAGTA 63394 |||| ||| Sbjct 8606430 CTCCAGGTA 8606438 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||||| || || || || ||||| || || || | ||||||| || || || | Sbjct 8608113 CACTAAATATCTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCTATTCGTGCAGCAAGGA 8608172 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | ||||| || || |||| || || ||||| || | || |||||||||||||||| Sbjct 8608173 TTGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCAGCAGTCTCCGCTGCCAGAGTGTCCA 8608232 Query 64126 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64171 || || || || |||||| | || | || || || |||||||| Sbjct 8608233 GCTCCACAGTAGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 8608278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629787620682240