Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2387 181 1e-40 seq963 98.7 9e-16 seq375 98.7 9e-16 seq52 98.7 9e-16 seq2122 95.1 1e-14 >seq2387 Length=643009 Score = 181 bits (200), Expect = 1e-40 Identities = 907/1429 (63%), Gaps = 13/1429 (1%) Strand=Plus/Minus Query 37123 AGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTA 37182 || || ||||| || | ||| || |||||||| | || || | || || || ||||| Sbjct 88049 AGATGAGGATTCACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTG 87990 Query 37183 GTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATT 37242 || || | || |||||||| || || | | || || | || || || || ||||| Sbjct 87989 GTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATC 87930 Query 37243 GGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTC 37302 || || | || ||||| || || | ||| ||| | || ||| || || ||| Sbjct 87929 GGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAGGAGCTTC 87870 Query 37303 CAATCCCATAAATCTGTTGGGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTC 37362 || ||||| | || || || |||| |||||| || || || || || ||||| || Sbjct 87869 CAGTCCCACAGGTCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTG 87810 Query 37363 GCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGAT 37422 | || || | | |||||||| || || ||| ||| || ||||| || | Sbjct 87809 ACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAGCCAGCTCGCAGCTCGCC 87750 Query 37423 TCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCG 37482 || || ||||| || || || || || || || || | || | | | || || | Sbjct 87749 TCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTGAGCCTCGGCA 87690 Query 37483 CTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATACCT 37542 || || || | || | || | || || |||||||||||||||| |||||||| ||| Sbjct 87689 CTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGATTCCT 87630 Query 37543 ATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATATCT 37602 || || || || ||| || || | | ||| ||| ||||| || || || ||| Sbjct 87629 ATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAGTAGTTAATGTCT 87570 Query 37603 ATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTC-TCAACTTGTCGAA--C 37659 || || || || || ||||| || | || ||| || | || | || ||| | || | Sbjct 87569 ATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCA-CATACGCCAGCTTTTTAAAGTC 87511 Query 37660 ATAAATACGTT-ATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAGC 37718 | || | |||| | | ||| | | | | | || || | |||||||| || || Sbjct 87510 AAAAGTCCGTTCAGGTGTGACATACATGTTGAGAGCGATGGAGGCCAGATTACAGACCGC 87451 Query 37719 AACTTCATCTTCGTTACTAAATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGT 37778 || ||||| ||| | | ||| | || ||||| ||||| || || || | || || Sbjct 87450 TACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGT 87391 Query 37779 TCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGT 37838 |||| || || ||| || | || || | ||||| || || || || || || Sbjct 87390 GCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGT 87331 Query 37839 TCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCT-TGCTTTAACGA-TC 37896 || |||| | || | ||||||||| | | ||| | || || || || || | || Sbjct 87330 ACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCA-CAGCTGCTGAGCCTTCACCACTC 87272 Query 37897 GCTTTAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTCCCCCAT 37956 || || | | || | ||||||| | || | | | || || | ||||| Sbjct 87271 GC-TTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTCCTCGAACTCCTCTCCCCAG 87213 Query 37957 ACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCT 38016 ||| | || || || ||| |||||||| || ||||| |||| | | || Sbjct 87212 CACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGACCAGTCTTGGTTGCTCTCC 87153 Query 38017 ACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTA-AATAAATCTTTGGTTCTATA 38075 || | | ||| || || || || | ||| | || ||| || | |||| ||| ||| | Sbjct 87152 ACCCTCTTCATGAACAAGTCGGGGATCCACAGGGC-GTAGAAAAGATCTCTGGCTCTTTG 87094 Query 38076 TTCTTCGTTCCCTACATTCTTTCTTAAGCT-TAGAAAATCGAATATATCAGCGTGCCATG 38134 || || |||||| ||| ||||| |||| || || ||||| | ||| |||||||| Sbjct 87093 CTCCTCCTTCCCTGTGTTC-TTCTTCAGCTCCAGGAAGTCGAAAACGTCAAAGTGCCATG 87035 Query 38135 GTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAA 38194 | || | || || | | ||||| ||||| || | || ||||| | | || | Sbjct 87034 GCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGGG 86975 Query 38195 CTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACCGG 38254 | ||||| || || | ||| | ||| || || | || || || ||||| || | |||| Sbjct 86974 CCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTGGAATTGCCATTGGTTCCGG 86915 Query 38255 ATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATGTT 38314 || || | ||| | | || || || | || || || ||||| || || || Sbjct 86914 CAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCGGCCGATT 86855 Query 38315 TTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTTTA 38374 | || || | ||||| || || | ||| ||| | || ||||| || ||||| ||||| | Sbjct 86854 TGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCA 86795 Query 38375 TTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGTAG 38434 | | || | || || || |||| || ||| ||||| || || || | ||||| Sbjct 86794 TGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGTGTAG 86735 Query 38435 GAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTA 38494 |||| || || ||||||| || || || | || || || || || | | || | Sbjct 86734 GAGAGGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGA 86675 Query 38495 TATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGG 38543 |||| | ||| || || | || || ||||||||||| || || || Sbjct 86674 TATCTGTTCTGTGGATGCCGACAGCCACTCTCATTAGCATGTGCTGAGG 86626 >seq963 Length=229635 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 212699 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 212640 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||| || |||||||| ||||| |||||||||||||| ||||| || Sbjct 212639 AGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGGCC 212580 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 212579 ACCACACGCTCTCC 212566 >seq375 Length=30079 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 25677 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 25736 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||| || |||||||| ||||| |||||||||||||| ||||| || Sbjct 25737 AGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGGCC 25796 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 25797 ACCACACGCTCTCC 25810 >seq52 Length=1057507 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 |||||||| || || || || || || || || | |||||||||| |||| || || Sbjct 13948 TCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 14007 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| || || ||||| || |||||||| ||||| |||||||||||||| ||||| || Sbjct 14008 AGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGGCC 14067 Query 11774 ACTACTCTTTCTCC 11787 || || | ||||| Sbjct 14068 ACCACACGCTCTCC 14081 >seq2122 Length=1387681 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || || ||||| || || ||||| ||| | || | |||||||| | |||| || || Sbjct 1083630 TCATCCCTACTGATCAGCTCATTGGAATAGGTAAGCCCGGGCATTAGGCCTCTCTTCTTG 1083571 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | |||| | || ||||| ||||| ||||| ||||| |||||||||||||||||||| || Sbjct 1083570 AGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCCTCCACAGCTGCAAAAGCC 1083511 Query 11774 AC 11775 || Sbjct 1083510 AC 1083509 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468502498219520