Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 594 7e-165
seq2122 96.9 5e-15
seq1563 96.9 5e-15
seq2049 87.8 2e-12
>seq2387
Length=643009
Score = 594 bits (658), Expect = 7e-165
Identities = 1322/1974 (67%), Gaps = 21/1974 (1%)
Strand=Plus/Minus
Query 65087 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 65146
||||||||||||| | || || | | ||||| ||||| ||| |||| | | |||
Sbjct 88128 CTGAATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCACTCCACAGTCCTCT 88069
Query 65147 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 65206
||| || || || | || ||||| ||||| || | || || |||||||| | || ||
Sbjct 88068 CTCTGTCAAGTCTTTGAGCAGATGAGGATTCACGATCTGGAACTCTCCAGAGAGGACCCT 88009
Query 65207 CCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGC 65266
|| ||||| || || ||||| || | || | ||||| || || |||| || || ||
Sbjct 88008 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 87949
Query 65267 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 65326
|| || || || ||||| || |||| || | || || || | |||| | | |||
Sbjct 87948 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGAT 87889
Query 65327 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 65386
|| || || || | | ||| | ||| || || | || | |
Sbjct 87888 CTTCTCCTTCAGGAGCTTCCAGTCCCACAGGTCAGTGGG--CGTCTTCTCCCACATGTCG 87831
Query 65387 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 65444
| || || || || || ||| || || ||| ||||| ||||| || || ||
Sbjct 87830 TACTGGAGGATGCCTTTGCTGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCG 87771
Query 65445 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 65504
|||| || || || |||||||| | || |||| || ||||| || ||||||| |
Sbjct 87770 GCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTG 87711
Query 65505 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 65564
|| || || || || || ||||| || ||| | || || || || || ||
Sbjct 87710 TTCAGCAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCC 87651
Query 65565 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 65624
|| || || ||||| || || || || || || | ||| || || | || ||||| ||
Sbjct 87650 AAACCCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGC 87591
Query 65625 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 65684
| ||||| || ||||| ||||| || || || || ||| |||| ||||||||| ||||
Sbjct 87590 ACCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACA 87531
Query 65685 TCCTTCAGTTTGAGAAAATCAAAT---CGCTCATCTATTACAAACATGTTCAATGCAACA 65741
| | ||| || ||| ||||| || ||| | | ||| ||||||| | || |
Sbjct 87530 TACGCCAGCTTTTTAAAGTCAAAAGTCCGTTCAGGTGTGACATACATGTTGAGAGCGATG 87471
Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801
|| ||||||||||| || |||||||||| | | |||| | || || |||||
Sbjct 87470 GAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAG 87411
Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861
|| || || || |||||||| || | || || || || ||||| |||| || || ||
Sbjct 87410 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 87351
Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 65920
|| || || ||| |||| ||||| ||||| |||| || || ||||| || | ||| | |
Sbjct 87350 TTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGC 87291
Query 65921 GACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCG 65980
|| ||||||| | | ||| ||| || | |||||| || || |
Sbjct 87290 TGCT-GAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTC 87232
Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040
|||||||| |||||||| | ||||| || || || || | ||||||||||| ||
Sbjct 87231 CTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGA 87172
Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 66099
||| ||| || || ||| | ||||| || | || || ||||| || || || ||
Sbjct 87171 CCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAA 87112
Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159
| | |||||||| ||| || ||||| || ||||| ||||| || || || ||||| | |
Sbjct 87111 A-AGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGA 87053
Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219
|| ||| | ||||| || |||| ||| ||||| | |||| || | ||||| || |
Sbjct 87052 AAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCAC 86993
Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279
|||| || | ||| | || ||||| || |||||||||| ||| || | | || ||||
Sbjct 86992 CCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTGG 86933
Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGAC 66339
| | |||||||| |||| || ||||| || | | | || || | | | |
Sbjct 86932 AATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGC 86873
Query 66340 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 66399
| ||||| || ||| ||| ||||| | ||||| | || | ||| ||||| ||||| |
Sbjct 86872 CGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTT 86813
Query 66400 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 66459
| || || || ||| ||||| || || || ||||| |||| || | | | ||||
Sbjct 86812 CGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTC 86753
Query 66460 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 66519
| ||||| || | |||||||| ||||| || ||||| || || || || || ||||| |
Sbjct 86752 CAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGG 86693
Query 66520 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 66579
|||| || || | || ||||| | || || || || || || | ||||| |||||
Sbjct 86692 TCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCCACTCTCATTAGCATGT 86633
Query 66580 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 66639
||||||| | || | | || ||||| || ||||||| |||||| | |||| ||| |
Sbjct 86632 GCTGAGGCCGCTCGGCCACTTTATTGTTGATCTTCAACAGGTAGGACCTCTCCAGAGTCT 86573
Query 66640 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT 66699
| || ||||| ||||||| || || |||| ||| |||| || | |||||||| |
Sbjct 86572 TGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCTGAGTTGAGGCGGT 86513
Query 66700 CCTTATATTTGTTAACTACATCCATGGTAATACTT-GAAATAATCGGAGAAT---GTTTC 66755
| || | | | || | || | ||| | ||| || || || || || | ||||
Sbjct 86512 CTTTGTTCTCGAGGACGATGTCAAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTTT- 86455
Query 66756 CCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 66815
|| ||| ||||| |||||| | | |||||||| || ||||| || | ||| |||
Sbjct 86454 --GTTCAGAGGGTTGACGTAGTTGTACAGGTCCTCCATGACATCACTGAACACTTTCTTT 86397
Query 66816 GTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCATAATCCGGATGT 66875
|| |||||||| || || || ||||| || | ||||| | |||||||| || || |||
Sbjct 86396 GTCTCTTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCATAGTCTGGGTGT 86337
Query 66876 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 66935
| || || ||||||||| || || || ||||| ||||||| || || || || |||
Sbjct 86336 TTGGTTGTGAGAGTGGCTGCGATCTCTGCGGCCAGCGTGTCCAGCTCCACTGTGGTGACT 86277
Query 66936 CCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTG 66995
|| | || | || ||||| |||||||| | || | || || | | |||| |
Sbjct 86276 CCGCTGTACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGGTCCACAAAGTCAGAG 86217
Query 66996 TTTAAGCCATAACATAATTTTCT-AATACGAGATGTGATTTTATCAAACATGAC 67048
|| | || || || || |||| || ||||| |||||||| || ||||||||
Sbjct 86216 TTCAGCCCGTAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTGTCGAACATGAC 86164
Score = 96.9 bits (106), Expect = 5e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965
|||| ||||| || ||||| || || |||||| || | || || || || ||||| |
Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921
Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025
||| || || || || || ||||||||||| | ||| |||||||| || | || ||||
Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861
Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076
| || | |||||||| | ||||| || | |||| | ||| |||||||
Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810
>seq2122
Length=1387681
Score = 96.9 bits (106), Expect = 5e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| || ||||| || | || |||||| | || || |||||||||||||| | ||| |
Sbjct 1083632 CCTCATCCCTACTGATCAGCTCATTGGAATAGGTAAGCCCGGGCATTAGGCCTCTCTTCT 1083573
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| |||||| | |||| || ||||| ||||| ||||| ||||| || || || ||||| |
Sbjct 1083572 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCCTCCACAGCTGCAAAAG 1083513
Query 36300 CAATAAGTCTCTCTcc 36315
| | || || ||| ||
Sbjct 1083512 CCACAATTCGCTCCCC 1083497
>seq1563
Length=18910200
Score = 96.9 bits (106), Expect = 5e-15
Identities = 121/166 (73%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858
||||||||| || || || |||||||| || || || || ||||||| || || | |
Sbjct 8608113 CACTAAATATCTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCTATTCGTGCAGCAAGGA 8608172
Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918
| ||||| || || |||| || || ||||| || | || ||||||||||||||||
Sbjct 8608173 TTGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCAGCAGTCTCCGCTGCCAGAGTGTCCA 8608232
Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964
|| || || || |||||| | || | || ||||| ||||||||
Sbjct 8608233 GCTCCACAGTAGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 8608278
Score = 93.3 bits (102), Expect = 6e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118
|||||||||||||||||| || || ||||| || || | || | ||||||| || ||
Sbjct 8606310 CACTCGTTTCATAAAGAGGTCTGGGATCCACAGGGCAAAGAACAGGTCTCTGGCCCTCTG 8606369
Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178
||||| || ||||| |||||||| | || | |||| | | | ||| |||||||||||
Sbjct 8606370 CTCCTCTTTACCTGTGTTCTTTTTCAACTCTAAGAACTCAAACACATCGTAATGCCACGG 8606429
Query 66179 TTCCAAGTA 66187
|||| |||
Sbjct 8606430 CTCCAGGTA 8606438
>seq2049
Length=2641258
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 9264 TGCAAGAACAGATTGATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCA 9323
|||| ||| || || | ||| |||| ||||| ||||| ||||| || | || || ||
Sbjct 1260979 TGCAGGAAGAGGTTCACGATGTCCAGGTAGAGGTTGATGGAGGCCAAGATATGCTCCTCG 1260920
Query 9324 GGCGAGAGCTTATGTATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGG 9383
|| ||||||| | || || ||| ||||| ||||| ||||| |||||||| || ||
Sbjct 1260919 GGGGAGAGCTGCTTCATCAGCAGGTGGGTGTCGTAGATGATGAAGCCGCAGAAGACCAGA 1260860
Query 9384 GCCCCAAAAGCAGACAGGACCAGCTC 9409
||||| ||| ||||||||||||
Sbjct 1260859 GCCCCGGCTCCAGCCAGGACCAGCTC 1260834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658141470974720
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