Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2387 612 3e-170 seq2122 111 2e-19 seq963 111 2e-19 seq375 111 2e-19 seq52 111 2e-19 seq1563 96.9 5e-15 >seq2387 Length=643009 Score = 612 bits (678), Expect = 3e-170 Identities = 1331/1974 (67%), Gaps = 21/1974 (1%) Strand=Plus/Minus Query 78966 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCT 79025 ||||||||||||| | || || | | ||||| ||||| ||| |||| | | ||| Sbjct 88128 CTGAATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCACTCCACAGTCCTCT 88069 Query 79026 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 79085 ||| || || || | || ||||| ||||| || | || || |||||||| | || || Sbjct 88068 CTCTGTCAAGTCTTTGAGCAGATGAGGATTCACGATCTGGAACTCTCCAGAGAGGACCCT 88009 Query 79086 CCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGC 79145 || ||||| || || ||||| || | || | || || || || |||| || || || Sbjct 88008 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 87949 Query 79146 AGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGATCTGAT 79205 || || ||||| ||||| || |||| || | || || || | |||| | ||| Sbjct 87948 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGAT 87889 Query 79206 TTTATCTTTTA-GAGATTCCCAATCCCAAAGATCAGACGG-GACAACATTCCAAAGATCA 79263 || || || | ||| || ||| ||||| || |||| || | | | | ||| | || Sbjct 87888 CTTCTCCTTCAGGAGCTT-CCAGTCCCACAGGTCAGTGGGCGTCTTC-TCCCACATGTCG 87831 Query 79264 TATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTT 79323 || || || || || || || || || ||| |||||| || || || || || Sbjct 87830 TACTGGAGGATGCCTTTGCTGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCG 87771 Query 79324 TCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTA 79383 | || | || || |||||||| | || |||| || ||||| || || |||| | Sbjct 87770 GCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTG 87711 Query 79384 TTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCT 79443 || || || || || || ||||| || ||| | || || || || || || Sbjct 87710 TTCAGCAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCC 87651 Query 79444 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGA 79503 || || || ||||| || || || || || || | ||| || || | || ||||| || Sbjct 87650 AAACCCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGC 87591 Query 79504 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTACTTTGACCACA 79563 | ||||| || ||||| ||||| || || || || || |||| ||||||||| |||| Sbjct 87590 ACCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACA 87531 Query 79564 TCCTTTAGTTTGAGAAAATCAAA---TCGTCCATCTATTACAAACATGTTCAACGCGACA 79620 | | || || ||| ||||| ||| || | | ||| ||||||| | |||| Sbjct 87530 TACGCCAGCTTTTTAAAGTCAAAAGTCCGTTCAGGTGTGACATACATGTTGAGAGCGATG 87471 Query 79621 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATTTCAGTGCAG 79680 || ||||||||||| || |||||||||| | | |||| | ||||| |||||| Sbjct 87470 GAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAG 87411 Query 79681 AGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 79740 ||||| || || || ||||| || | || || || || ||||| |||| || || || Sbjct 87410 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 87351 Query 79741 TTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 79799 || || || ||| | || ||||| ||||| |||| || || ||||| || | ||| | | Sbjct 87350 TTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGC 87291 Query 79800 GACTCGAGCCTTTATTATAGACTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCG 79859 || ||||||| | | |||| ||| || | ||||||| || || | Sbjct 87290 TGCT-GAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTC 87232 Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 |||||||| |||||||| ||||| | || || || |||| |||||||||| || Sbjct 87231 CTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGA 87172 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 79978 ||| ||| | || || | ||||| || | || || ||||| || || || || Sbjct 87171 CCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAA 87112 Query 79979 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 80038 | |||||||||| ||| |||||||| || ||||| ||||| || || || ||||| | | Sbjct 87111 A-AGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGA 87053 Query 80039 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 || ||| | ||||| || |||| ||| ||||| | |||| |||| ||||| || | Sbjct 87052 AAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCAC 86993 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | ||| | || ||||| || |||||||||| ||| || | | || |||| Sbjct 86992 CCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTGG 86933 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 80218 | | |||||||| |||| || ||||| || | | | || || | | | | Sbjct 86932 AATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGC 86873 Query 80219 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 80278 | ||||| || ||| ||| ||||| | ||||| | || | ||| ||||| ||||| | Sbjct 86872 CGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTT 86813 Query 80279 CTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 80338 | ||||| || || ||||| || || || ||||| |||| || | | | |||| Sbjct 86812 CGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTC 86753 Query 80339 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 80398 | ||||| || | |||||||| ||||| || ||||| || || || || || ||||| | Sbjct 86752 CAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGG 86693 Query 80399 TCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGT 80458 |||| || || | || ||||| | || || || || || || | ||||| ||||| Sbjct 86692 TCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCCACTCTCATTAGCATGT 86633 Query 80459 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTT 80518 ||||||| | || | | || || || || ||||||| ||| || | |||| ||| | Sbjct 86632 GCTGAGGCCGCTCGGCCACTTTATTGTTGATCTTCAACAGGTAGGACCTCTCCAGAGTCT 86573 Query 80519 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT 80578 | || ||||| ||||||| || || |||| ||| |||| || | |||||||| | Sbjct 86572 TGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCTGAGTTGAGGCGGT 86513 Query 80579 CCTTATATTTGTTAACTACATCCATGGTGATACTT-GAAATAATCGGAGAAT---GTTTC 80634 | || | | | || | || | ||| | ||| || || || || || | |||| Sbjct 86512 CTTTGTTCTCGAGGACGATGTCAAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTTT- 86455 Query 80635 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 80694 || ||| || || |||||| | | |||||||| || ||||| || | ||| ||| Sbjct 86454 --GTTCAGAGGGTTGACGTAGTTGTACAGGTCCTCCATGACATCACTGAACACTTTCTTT 86397 Query 80695 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATGT 80754 || || ||||| || || || ||||| || | |||||| | |||||||| ||||| ||| Sbjct 86396 GTCTCTTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCATAGTCTGGGTGT 86337 Query 80755 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 80814 | || || ||||||||| || || || ||||| ||||||| || || || || ||| Sbjct 86336 TTGGTTGTGAGAGTGGCTGCGATCTCTGCGGCCAGCGTGTCCAGCTCCACTGTGGTGACT 86277 Query 80815 CCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTG 80874 || | || | || ||||| |||||||| | || | || || | | |||| | Sbjct 86276 CCGCTGTACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGGTCCACAAAGTCAGAG 86217 Query 80875 TTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 80927 || | || || || || |||| || ||||| |||||||| || |||||||| Sbjct 86216 TTCAGCCCGTAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTGTCGAACATGAC 86164 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || |||||| || | || || || || ||||| | Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 ||| || || || || || ||||||||||| | ||| |||||||| || | || |||| Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | ||||| || | |||| | ||| ||||||| Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810 >seq2122 Length=1387681 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| || ||||| || || || |||||| | || || |||||||||||||| | ||| | Sbjct 1083632 CCTCATCCCTACTGATCAGCTCATTGGAATAGGTAAGCCCGGGCATTAGGCCTCTCTTCT 1083573 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | |||||| | |||| || ||||| ||||| ||||||||||| || || || ||||| | Sbjct 1083572 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCCTCCACAGCTGCAAAAG 1083513 Query 50102 CAACAAGTCTCTCTCC 50117 | |||| || ||| || Sbjct 1083512 CCACAATTCGCTCCCC 1083497 >seq963 Length=229635 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 212701 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 212642 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | || || || ||||| ||||||||||| || || |||||||||| Sbjct 212641 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 212582 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 212581 CCACCACACGCTCTCC 212566 >seq375 Length=30079 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 25675 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 25734 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | || || || ||||| ||||||||||| || || |||||||||| Sbjct 25735 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 25794 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 25795 CCACCACACGCTCTCC 25810 >seq52 Length=1057507 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||||||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 13946 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 14005 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || || | || || || ||||| ||||||||||| || || |||||||||| Sbjct 14006 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 14065 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 14066 CCACCACACGCTCTCC 14081 >seq1563 Length=18910200 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||||||||| || || ||||| || || | || || ||||||| || ||| Sbjct 8606311 ACTCGTTTCATAAAGAGGTCTGGGATCCACAGGGCAAAGAACAGGTCTCTGGCCCTCTGC 8606370 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || ||||| |||||||| | || | |||| | | | ||| |||||||||| Sbjct 8606371 TCCTCTTTACCTGTGTTCTTTTTCAACTCTAAGAACTCAAACACATCGTAATGCCACGGC 8606430 Query 80059 TCCAAGTA 80066 |||| ||| Sbjct 8606431 TCCAGGTA 8606438 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 80678 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAA 80737 ||||||||| || || || || ||||| || || || || ||||||| || || | | Sbjct 8608113 CACTAAATATCTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCTATTCGTGCAGCAAGGA 8608172 Query 80738 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 80797 | ||||| || || |||| || || ||||| || | || |||||||||||||||| Sbjct 8608173 TTGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCAGCAGTCTCCGCTGCCAGAGTGTCCA 8608232 Query 80798 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 80843 || || || || |||||| | || | || ||||| |||||||| Sbjct 8608233 GCTCCACAGTAGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 8608278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718234610405120