Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2387 560 1e-154 seq2122 102 1e-16 seq1563 96.9 5e-15 seq963 93.3 6e-14 seq375 93.3 6e-14 seq52 93.3 6e-14 >seq2387 Length=643009 Score = 560 bits (620), Expect = 1e-154 Identities = 1315/1974 (67%), Gaps = 21/1974 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||||||||||||| | || || | | || || ||||| ||| |||| | | ||| Sbjct 88128 CTGAATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCACTCCACAGTCCTCT 88069 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || || || | || ||||||||||| || | || || |||||||| | || || Sbjct 88068 CTCTGTCAAGTCTTTGAGCAGATGAGGATTCACGATCTGGAACTCTCCAGAGAGGACCCT 88009 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | || | ||||| || || |||| || || || Sbjct 88008 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 87949 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGGAT 71288 || || || || ||||| || |||| || || || || || | || ||| ||| Sbjct 87948 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGAT 87889 Query 71289 TTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNNNN 71347 || || || || || |||| | | ||| || || | || Sbjct 87888 CTTCTCCTTCAGGAGCTTCC-AGTCCCACAGGTCAGTGGGCGTCTTCTCCCACATGTCGT 87830 Query 71348 NNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTTTT 71407 ||||| || || || || ||| ||||| ||||| || || | Sbjct 87829 ACTGGAGGATGCCTTTGCTGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCGG 87770 Query 71408 CGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTAT 71467 | || || || || |||||||| | || | || || ||||| || || |||| | | Sbjct 87769 CAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGT 87710 Query 71468 TGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTA 71527 | || || || || | || ||||| || ||| | || || || || || || | Sbjct 87709 TCAGCAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCA 87650 Query 71528 ATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAA 71587 | || || || || || || || || ||||| | ||| || || | || ||||| || | Sbjct 87649 AACCCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCA 87590 Query 71588 TAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCACAT 71647 ||||| || ||||| ||||| || || || || ||| |||| ||||||||| ||||| Sbjct 87589 CCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACAT 87530 Query 71648 CCTTTAGTTTGAGAAAATCAAATCTCCCATC---TATTACAAACACGTTCAAGGCAACAG 71704 | || || ||| ||||| ||| || | | ||| ||| ||| | || | | Sbjct 87529 ACGCCAGCTTTTTAAAGTCAAAAGTCCGTTCAGGTGTGACATACATGTTGAGAGCGATGG 87470 Query 71705 ATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAA 71764 | ||||||||||| || |||||||||| | || |||| | ||||| ||||| | Sbjct 87469 AGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAGA 87410 Query 71765 GATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCT 71824 | || || || |||||||| || | || || || || ||||| |||| || || || | Sbjct 87409 GGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 87350 Query 71825 TATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CG 71883 | || || || | || ||||| ||||| |||| || || ||||| || | ||| | | Sbjct 87349 TGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGCT 87290 Query 71884 ACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGT 71943 || ||||||| | | |||| ||| || | ||||||| || || | Sbjct 87289 GCT-GAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTCC 87231 Query 71944 TCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||||| ||||||| |||| | ||| | || || || || ||||||||||||| || Sbjct 87230 TCGAACTCCTCTCCCC-AGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGA 87172 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 72061 ||| ||| | | || | ||||| || | || || ||||| || || || || Sbjct 87171 CCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAA 87112 Query 72062 ATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 72121 | |||||||||| ||| |||||||| || ||||| ||||| || || || ||||| | | Sbjct 87111 A-AGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGA 87053 Query 72122 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 || ||| | ||||| || |||| ||| ||||| | |||| || | ||||| || | Sbjct 87052 AAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCAC 86993 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | ||| | || ||||| || |||||||||| ||| || | | || |||| Sbjct 86992 CCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTGG 86933 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGATAGAC 72301 | |||||||| |||| || ||||| || | | | || ||| | | | | Sbjct 86932 AATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGC 86873 Query 72302 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCT 72361 | ||||| || ||| ||| ||||| | ||||| | || | ||| ||||| ||||| | Sbjct 86872 CGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTT 86813 Query 72362 CTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 72421 | || || || ||| ||||| || || || ||||| |||| || | | | |||| Sbjct 86812 CGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTC 86753 Query 72422 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACG 72481 | ||||| || | |||||||| ||||| || ||||| || || || || || ||||| | Sbjct 86752 CAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGG 86693 Query 72482 TCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATAT 72541 |||| || || | || ||||| | || || || || || || | ||||| ||| | Sbjct 86692 TCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCCACTCTCATTAGCATGT 86633 Query 72542 GCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 72601 ||||||| | || | | || || || || ||||||| |||||| | |||| ||| | Sbjct 86632 GCTGAGGCCGCTCGGCCACTTTATTGTTGATCTTCAACAGGTAGGACCTCTCCAGAGTCT 86573 Query 72602 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTAT 72661 | || ||||| ||||||| || || |||| ||| |||| || | || ||||| | Sbjct 86572 TGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCTGAGTTGAGGCGGT 86513 Query 72662 CCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT---GTTTC 72717 | || | | | || || || | ||| | ||| || || || || || | |||| Sbjct 86512 CTTTGTTCTCGAGGACGATGTCAAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTTT- 86455 Query 72718 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 72777 || ||| || || |||||| | | |||||||| || ||||| || | ||| ||| Sbjct 86454 --GTTCAGAGGGTTGACGTAGTTGTACAGGTCCTCCATGACATCACTGAACACTTTCTTT 86397 Query 72778 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATGT 72837 || || ||||| || || || ||||| || | |||||| || |||||||| ||||| ||| Sbjct 86396 GTCTCTTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCATAGTCTGGGTGT 86337 Query 72838 TGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 72897 | || || ||||||||| || ||||| ||||| ||||||| || || || || ||| Sbjct 86336 TTGGTTGTGAGAGTGGCTGCGATCTCTGCGGCCAGCGTGTCCAGCTCCACTGTGGTGACT 86277 Query 72898 CCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGGATCTATATGATCAGTG 72957 || | || | || ||||| |||||||| | || | || || | | |||| | Sbjct 86276 CCGCTGTACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGGTCCACAAAGTCAGAG 86217 Query 72958 TTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATAAC 73010 || | || || || || |||| || ||||| |||||||| || ||||| || Sbjct 86216 TTCAGCCCGTAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTGTCGAACATGAC 86164 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || |||||| ||| | || ||||| ||||| || | Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 ||| ||||| || || || ||||||||||| | ||| |||||||| || | || |||| Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | ||||| || | |||| | ||| ||||||| Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810 >seq2122 Length=1387681 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||| ||||| || | || |||||| | || || |||||||||||||| | ||| | Sbjct 1083632 CCTCATCCCTACTGATCAGCTCATTGGAATAGGTAAGCCCGGGCATTAGGCCTCTCTTCT 1083573 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | |||||| | || | || ||||| ||||| ||||||||||| || || || ||||| | Sbjct 1083572 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCCTCCACAGCTGCAAAAG 1083513 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||| || Sbjct 1083512 CCACAATTCGCTCCCC 1083497 >seq1563 Length=18910200 Score = 96.9 bits (106), Expect = 5e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||||||||| || || ||||| || || | || || ||||||| || ||| Sbjct 8606311 ACTCGTTTCATAAAGAGGTCTGGGATCCACAGGGCAAAGAACAGGTCTCTGGCCCTCTGC 8606370 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || ||||| |||||||| | || | |||| | | | ||| |||||||||| Sbjct 8606371 TCCTCTTTACCTGTGTTCTTTTTCAACTCTAAGAACTCAAACACATCGTAATGCCACGGC 8606430 Query 72142 TCCAAGTA 72149 |||| ||| Sbjct 8606431 TCCAGGTA 8606438 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 72761 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 72820 ||||||||| || || || || ||||| || || || || ||||||| || || || | Sbjct 8608113 CACTAAATATCTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCTATTCGTGCAGCAAGGA 8608172 Query 72821 TGGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCA 72880 | ||||| || || |||| || || ||||| || | || |||||||||||||||| Sbjct 8608173 TTGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCAGCAGTCTCCGCTGCCAGAGTGTCCA 8608232 Query 72881 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 72926 || || || || |||||| | || | || ||||| |||||||| Sbjct 8608233 GCTCCACAGTAGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 8608278 >seq963 Length=229635 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 212701 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 212642 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || ||||||| Sbjct 212641 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 212582 Query 42207 C 42207 | Sbjct 212581 C 212581 >seq375 Length=30079 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 25675 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 25734 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || ||||||| Sbjct 25735 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 25794 Query 42207 C 42207 | Sbjct 25795 C 25795 >seq52 Length=1057507 Score = 93.3 bits (102), Expect = 6e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||| ||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 13946 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 14005 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || ||||||| Sbjct 14006 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 14065 Query 42207 C 42207 | Sbjct 14066 C 14066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671107253774080