Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2387 131 2e-25 seq1756 84.2 3e-11 >seq2387 Length=643009 Score = 131 bits (144), Expect = 2e-25 Identities = 346/526 (66%), Gaps = 18/526 (3%) Strand=Plus/Plus Query 96806 AACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACG 96865 ||| || ||||| ||| || || || || ||||| ||| | ||||| | | | || Sbjct 86919 AACCAATGGCAATTCCAACGGGCTGGTCCCCATGCTGAGAGTTTACAACAACACGGCCCG 86978 Query 96866 ATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTG 96925 ||||| ||||| ||||| || | || || || | ||| | ||| |||| || || Sbjct 86979 TTACGTCGACCAGGGTGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCATG 87038 Query 96926 GCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACG 96985 |||| |||||||| ||||| | ||| || || ||| | || || ||| | | Sbjct 87039 GCACTTTGACGTTTTCGACTTCCTGGAGCTGAAGAAGAACACAGGGAAGGAGGAGCAAAG 87098 Query 96986 AGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------ 97039 |||||| || | || || || || ||| | || || |||||||||||| | || Sbjct 87099 AGCCAGAGATCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGGGTGGAGAG 87158 Query 97040 CAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTG 97099 |||| | | ||||| ||| ||||| || || || ||||| ||| ||| || Sbjct 87159 CAACCAAG------ACTGGTCCCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTG 87212 Query 97100 CTGGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAG 97159 |||||| || ||||| |||| ||||| |||||| | ||||| || || | Sbjct 87213 CTGGGGAGAGGAGTTCGAGGAGCTCTACACCAAATACGAGAAGGAGGG--GA-GGGTCAA 87269 Query 97160 ACGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGG 97216 ||||| | | || | | |||||| | ||||| | | | ||| ||| || || Sbjct 87270 GCGAGTGGTGAAGGCTCAGCAGCTGTGGTACGCCATTATCGAGTCCCAGACAGAAACCGG 87329 Query 97217 AACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGG 97276 || || ||||| || ||||| || || || | || |||||||| | || |||| Sbjct 87330 TACACCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGG 87389 Query 97277 CACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 ||||||||| || ||| || ||||| ||||| || || ||| || Sbjct 87390 CACCATCAAATGCAGCAACCTCTGCACAGAAATCGTTGAATACACC 87435 >seq1756 Length=808860 Score = 84.2 bits (92), Expect = 3e-11 Identities = 115/154 (75%), Gaps = 9/154 (6%) Strand=Plus/Plus Query 69962 GGATCGACCAATGCCAAAGAGCTG--AGCCGAAAGGGTGTACACATTTGGAGCGGCAACA 70019 ||||| || |||||||| ||||| ||| ||||||| || | |||||| | |||| Sbjct 97002 GGATCAACAAATGCCAAGGAGCTCTCAGC-GAAAGGG-GTGAAGATTTGGGATGCCAACG 97059 Query 70020 GTAGTCGAAGCGTTT--TGGATTCGCTCGGCTTCACCGACAGACAAGAGGGCGATCTGGG 70077 | ||| | ||| |||| || || ||||| |||||| | |||||||| ||||| Sbjct 97060 G--GTCCCGGGATTTCCTGGACAACCTTGGGTTCACGGACAGAGAGGAGGGCGACCTGGG 97117 Query 70078 GCCAGTGTACGGATTCCAGTGGAGGCAC-TCGGG 70110 || |||||||| ||||||||||||||| ||||| Sbjct 97118 ACCTGTGTACGGTTTCCAGTGGAGGCACTTCGGG 97151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741023925582080