Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq10 93.3 2e-14
seq3402 89.7 3e-13
seq2308 84.2 1e-11
seq84 84.2 1e-11
seq68 84.2 1e-11
seq2110 82.4 4e-11
seq1949 82.4 4e-11
seq1745 82.4 4e-11
>seq10
Length=14175190
Score = 93.3 bits (102), Expect = 2e-14
Identities = 72/85 (85%), Gaps = 1/85 (1%)
Strand=Plus/Minus
Query 11446 AAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||||| |||||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 13287250 AAAATCAACATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 13287191
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 13287190 CTCTAACCAACTGAGCTAACCGGCC 13287166
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 14061379 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 14061438
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 14061439 CTGAGCTAACCGGCC 14061453
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 14061916 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 14061975
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 14061976 CTGAGCTAACCGGCC 14061990
>seq3402
Length=17327306
Score = 89.7 bits (98), Expect = 3e-13
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||
Sbjct 10636424 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 10636365
Query 11514 ACTGAGCTAATGGGCCGT 11531
|||||||||| ||||||
Sbjct 10636364 ACTGAGCTAACCGGCCGT 10636347
Score = 87.8 bits (96), Expect = 9e-13
Identities = 85/106 (80%), Gaps = 3/106 (3%)
Strand=Plus/Minus
Query 11427 GGAAATAT-AGA-ATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGAC 11483
|| ||||| ||| ||| | |||||||| | |||||| | |||||||||| ||||
Sbjct 10631542 GGCAATATTAGAGATTCGTCAAAAATCAGCAGTGGCCCGTACGGGGATCGAACCCGCGAC 10631483
Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
||| ||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 10631482 CTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 10631437
Score = 87.8 bits (96), Expect = 9e-13
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512
||||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||
Sbjct 10638808 AATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 10638749
Query 11513 AACTGAGCTAATGGGCC 11529
||||||||||| ||||
Sbjct 10638748 AACTGAGCTAACCGGCC 10638732
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 10634149 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 10634090
Query 11528 CC 11529
||
Sbjct 10634089 CC 10634088
>seq2308
Length=507546
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 71455 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 71396
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 71395 CTGAGCTAACCGGCC 71381
>seq84
Length=3155302
Score = 84.2 bits (92), Expect = 1e-11
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||||
Sbjct 25160 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 25101
Query 11515 CTGAGCTAATGGGCC 11529
||||||||| ||||
Sbjct 25100 CTGAGCTAACCGGCC 25086
>seq68
Length=12864767
Score = 84.2 bits (92), Expect = 1e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 4357393 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4357452
Query 11528 CC-GTCG 11533
|| ||||
Sbjct 4357453 CCAGTCG 4357459
>seq2110
Length=1947546
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1835781 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1835722
Query 11528 CC 11529
||
Sbjct 1835721 CC 1835720
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1836508 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1836449
Query 11528 CC 11529
||
Sbjct 1836448 CC 1836447
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 1836899 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1836840
Query 11528 CC 11529
||
Sbjct 1836839 CC 1836838
>seq1949
Length=3206086
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2341974 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2341915
Query 11528 CC 11529
||
Sbjct 2341914 CC 2341913
>seq1745
Length=694031
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 568552 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 568611
Query 11528 CC 11529
||
Sbjct 568612 CC 568613
Lambda K H
0.638 0.409 0.920
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261479064193408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |