Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 2e-14 seq3402 89.7 3e-13 seq2308 84.2 1e-11 seq84 84.2 1e-11 seq68 84.2 1e-11 seq2110 82.4 4e-11 seq1949 82.4 4e-11 seq1745 82.4 4e-11 >seq10 Length=14175190 Score = 93.3 bits (102), Expect = 2e-14 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 11446 AAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||||| |||||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 13287250 AAAATCAACATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 13287191 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 13287190 CTCTAACCAACTGAGCTAACCGGCC 13287166 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 14061379 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 14061438 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 14061439 CTGAGCTAACCGGCC 14061453 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 14061916 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 14061975 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 14061976 CTGAGCTAACCGGCC 14061990 >seq3402 Length=17327306 Score = 89.7 bits (98), Expect = 3e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||| | |||||||||| ||||||| ||||||||||||| ||||||| |||| Sbjct 10636424 ATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCA 10636365 Query 11514 ACTGAGCTAATGGGCCGT 11531 |||||||||| |||||| Sbjct 10636364 ACTGAGCTAACCGGCCGT 10636347 Score = 87.8 bits (96), Expect = 9e-13 Identities = 85/106 (80%), Gaps = 3/106 (3%) Strand=Plus/Minus Query 11427 GGAAATAT-AGA-ATTAATAAAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGAC 11483 || ||||| ||| ||| | |||||||| | |||||| | |||||||||| |||| Sbjct 10631542 GGCAATATTAGAGATTCGTCAAAAATCAGCAGTGGCCCGTACGGGGATCGAACCCGCGAC 10631483 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||| ||||||| |||||||||||||| |||| Sbjct 10631482 CTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGGCC 10631437 Score = 87.8 bits (96), Expect = 9e-13 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 ||||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||| Sbjct 10638808 AATTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACC 10638749 Query 11513 AACTGAGCTAATGGGCC 11529 ||||||||||| |||| Sbjct 10638748 AACTGAGCTAACCGGCC 10638732 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 10634149 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 10634090 Query 11528 CC 11529 || Sbjct 10634089 CC 10634088 >seq2308 Length=507546 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 71455 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 71396 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 71395 CTGAGCTAACCGGCC 71381 >seq84 Length=3155302 Score = 84.2 bits (92), Expect = 1e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||| | |||||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 25160 TTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 25101 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25100 CTGAGCTAACCGGCC 25086 >seq68 Length=12864767 Score = 84.2 bits (92), Expect = 1e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 4357393 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 4357452 Query 11528 CC-GTCG 11533 || |||| Sbjct 4357453 CCAGTCG 4357459 >seq2110 Length=1947546 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1835781 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1835722 Query 11528 CC 11529 || Sbjct 1835721 CC 1835720 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1836508 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1836449 Query 11528 CC 11529 || Sbjct 1836448 CC 1836447 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 1836899 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 1836840 Query 11528 CC 11529 || Sbjct 1836839 CC 1836838 >seq1949 Length=3206086 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2341974 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2341915 Query 11528 CC 11529 || Sbjct 2341914 CC 2341913 >seq1745 Length=694031 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 568552 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 568611 Query 11528 CC 11529 || Sbjct 568612 CC 568613 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261479064193408