Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq16 149 9e-31 seq2 136 6e-27 seq2907 87.8 3e-12 >seq16 Length=2433014 Score = 149 bits (164), Expect = 9e-31 Identities = 144/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || |||||| || |||||||||||||| |||||||| |||||||||||||| ||| Sbjct 1109421 AAGCCCACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCCGGGGAGCAGATGGGGTTT 1109480 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 |||| | |||||||||||| || || ||||||| ||| | ||| |||| ||||||||| Sbjct 1109481 CCCATTAAGCCTTTGAGGGAGAAAGGGGCCCCCATCTCCACCATGGTCTCTCCGAAGATG 1109540 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 |||||||| | ||| || ||||||| | || | ||| | |||||| || || | | | Sbjct 1109541 GCGTTGGGTCTGGGTTTCTCCACCAGCAGGCCTGGGTAGAGCTCCACGGCATCCACATGT 1109600 Query 8933 CCGTA 8937 ||||| Sbjct 1109601 CCGTA 1109605 Score = 127 bits (140), Expect = 3e-24 Identities = 180/253 (71%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 9610 TCCCCGATAATGATGAGTCGAGTGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGT 9669 || || || | |||||| || |||||||| || ||| ||| ||| ||| || || || Sbjct 1111317 TCACCAATCAGGATGAGCCGTGTGGTCTGGAAGAGTCTTTCATCATCCCAGTCGGGGTGC 1111376 Query 9670 TCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATC 9729 | ||||| ||||| ||||| | |||||| |||| ||||| || || ||||||||| Sbjct 1111377 ACCTCCTTCAGCACATCACACACCCGGTTGTGCTCCCGCAGCCAAATGGTGGCGTACATC 1111436 Query 9730 ATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGC 9789 || |||||||| ||||||||||| ||||| || || ||||| | || | ||||| Sbjct 1111437 ATCAGACCAGGGACCAGGCCAAAGGCCTCGTGGCCCACAGCAAAGCGGTGAGAGTCGGGA 1111496 Query 9790 ACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCA 9849 || | ||||| ||| ||||| || || || || || | ||||| || || || Sbjct 1111497 ACATGAGGAGGGTAGTGCATGTCGACACCCACTTCCTTTACTGTTGGGGGGTATATCTCC 1111556 Query 9850 CCGTCAATAATCT 9862 || || || |||| Sbjct 1111557 CCATCCATGATCT 1111569 >seq2 Length=6798370 Score = 136 bits (150), Expect = 6e-27 Identities = 179/248 (72%), Gaps = 0/248 (0%) Strand=Plus/Plus Query 8693 GGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATCCCA 8752 ||||||| ||| |||| ||| || || || | ||| | | |||||||| | Sbjct 2261959 GGACACCACTTGGTGTTGAGACACACCAGTTTCTTCAAAGTGGAGGTTTTGACGATGTTA 2262018 Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || || ||||| || ||||||||||| |||||||| | |||||||||||| ||| Sbjct 2262019 AAGCCAGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGGGGAGCAGATGGGGTTT 2262078 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 ||| ||||||||| ||||| || ||||| |||| ||| | || ||||||||||| ||| Sbjct 2262079 CCCAGGAGGCCTTTCAGGGAGAATGGAGCACCCATCTCCACCATACTCTCACCGAATATG 2262138 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | ||||| | || |||| || || ||| | ||| ||||||| || || ||||| Sbjct 2262139 CCACCAGGACGTGTTTTCTCCAGCAGGACTCCAGGGTAAAACTCCAACGCATCAATGTCC 2262198 Query 8933 CCGTAAAG 8940 ||||| || Sbjct 2262199 CCGTATAG 2262206 >seq2907 Length=4004126 Score = 87.8 bits (96), Expect = 3e-12 Identities = 175/258 (68%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 9609 TTCCCCGATAATGATGAGTCGAGTGGTCTG-AAACAGTTGTTCGTCACTCCATTCTGGAT 9667 ||| || || | ||||| || |||||||| ||| || ||||||||| ||| |||| Sbjct 1304607 TTCACCAATGACAATGAGGCGTGTGGTCTGGAAAAAGCTGTTCGTCATCCCAGGTGGGAT 1304666 Query 9668 GTTCTCGTTTCAGAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACA 9727 | ||| |||||| | || || |||| ||| || || || ||||| | |||||||||| Sbjct 1304667 GCTCTGCTTTCAGGATGTCACAGACTCGGTTATGCTCTCTCAGCCACAGCGTAGCGTACA 1304726 Query 9728 TCATGAGACCAGGCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGG 9787 | | |||||| | || ||||| | || ||||| | ||||| | | | || Sbjct 1304727 TTCCCAAACCAGGGAGGAGTCCAAACACTTCCTGACCAATAGCCATCTGTCTCTCAGGGG 1304786 Query 9788 GCACTTCGGGAGGATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTT 9847 | | | | ||||| ||| |||| | || | |||| || || || || ||||| | Sbjct 1304787 GGATTCCAGGAGGGTAGCTCATCTTAACAGGTGCATCGACTACAGAAGGAGGGTACATCT 1304846 Query 9848 CACCGTCAATAATCTGAT 9865 | |||||||| | || || Sbjct 1304847 CGCCGTCAATTAACTAAT 1304864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708491074219520