Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 590 8e-164
seq2122 114 2e-20
seq963 111 2e-19
seq375 111 2e-19
seq52 111 2e-19
seq1563 93.3 5e-14
seq689 84.2 3e-11
seq678 84.2 3e-11
>seq2387
Length=643009
Score = 590 bits (654), Expect = 8e-164
Identities = 1321/1974 (67%), Gaps = 21/1974 (1%)
Strand=Plus/Minus
Query 62243 CTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCT 62302
||||||||||||| | || || | | ||||| ||||| ||| |||| | | |||
Sbjct 88128 CTGAATGGATCCATTGTGAGCGATCAGCTGGTTCTTCATCTCCTCACTCCACAGTCCTCT 88069
Query 62303 CTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCT 62362
||| || || || | || ||||| ||||| || | || || |||||||| | || ||
Sbjct 88068 CTCTGTCAAGTCTTTGAGCAGATGAGGATTCACGATCTGGAACTCTCCAGAGAGGACCCT 88009
Query 62363 CCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGC 62422
|| ||||| || || ||||| || | || | ||||| || || |||| || || ||
Sbjct 88008 GCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGC 87949
Query 62423 AGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTGAT 62482
|| || || || ||||| || |||| || | || || || | |||| | | |||
Sbjct 87948 GGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGAT 87889
Query 62483 TTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTACAACNNNNNNNNNNNNNNN 62542
|| || || || | | ||| | ||| || || | || | |
Sbjct 87888 CTTCTCCTTCAGGAGCTTCCAGTCCCACAGGTCAGTGGG--CGTCTTCTCCCACATGTCG 87831
Query 62543 T--TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTC 62600
| || || || || || ||| || || ||| ||||| ||||| || || ||
Sbjct 87830 TACTGGAGGATGCCTTTGCTGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCG 87771
Query 62601 TCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTA 62660
|||| || || || |||||||| | || |||| || ||||| || ||||||| |
Sbjct 87770 GCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTG 87711
Query 62661 TTTAGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCT 62720
|| || || || || || ||||| || ||| | || || || || || ||
Sbjct 87710 TTCAGCAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCC 87651
Query 62721 AATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGA 62780
|| || || ||||| || || || || || || | ||| || || | || ||||| ||
Sbjct 87650 AAACCCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGC 87591
Query 62781 ATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTACTTTGACCACA 62840
| ||||| || ||||| ||||| || || || || ||| |||| ||||||||| ||||
Sbjct 87590 ACCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACA 87531
Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCATC---TATTACAAACATGTTCAAGGCAACA 62897
| | ||| || ||| ||||| || || | | ||| ||||||| | || |
Sbjct 87530 TACGCCAGCTTTTTAAAGTCAAAAGTCCGTTCAGGTGTGACATACATGTTGAGAGCGATG 87471
Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957
|| ||||||||||| || |||||||||| | | |||| | || || |||||
Sbjct 87470 GAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAG 87411
Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017
|| || || || ||||| || || | || || || || ||||| |||| || || ||
Sbjct 87410 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 87351
Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA-C 63076
|| || || ||| |||| ||||| ||||| |||| || || ||||| || | ||| | |
Sbjct 87350 TTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGC 87291
Query 63077 GACTCGAGCCTTTATTATAGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCG 63136
|| ||||||| | | ||| |||| || | |||||| || || |
Sbjct 87290 TGCT-GAGCCTTCACCACTCGCTTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTC 87232
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
|||||||| |||||||| | ||||| || || || || | ||||||||||| ||
Sbjct 87231 CTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGA 87172
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGC-TATAA 63255
||| ||| || || ||| | ||||| || | || || ||||| || || || ||
Sbjct 87171 CCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAA 87112
Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315
| |||||||||| ||| || ||||| || ||||| ||||| || || || ||||| | |
Sbjct 87111 A-AGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGA 87053
Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375
|| ||| | ||||| || |||| ||| ||||| | |||| || | ||||| || |
Sbjct 87052 AAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCAC 86993
Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435
|||| || | ||| | || ||||| || |||||||||| ||| || | | ||||| |
Sbjct 86992 CCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTGG 86933
Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGAC 63495
| | |||||||| |||| || ||||| || | | | || || | | | |
Sbjct 86932 AATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGC 86873
Query 63496 CTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCT 63555
| ||||| || ||| ||| ||||| | ||||| | || | ||||||||| || || |
Sbjct 86872 CGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTT 86813
Query 63556 CTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTC 63615
| ||||| || || ||||| || || || ||||| |||| || | | | ||||
Sbjct 86812 CGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTC 86753
Query 63616 CCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACG 63675
| ||||| || | |||||||| ||||| || ||||| || || || || || ||||| |
Sbjct 86752 CAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGG 86693
Query 63676 TCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63735
|||| || || | || ||||| | || || || || || || | ||||| |||||
Sbjct 86692 TCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCCACTCTCATTAGCATGT 86633
Query 63736 GCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTT 63795
||||||| | || | | || ||||| || ||||||| |||||| | |||| ||| |
Sbjct 86632 GCTGAGGCCGCTCGGCCACTTTATTGTTGATCTTCAACAGGTAGGACCTCTCCAGAGTCT 86573
Query 63796 TAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTAT 63855
| || ||||| ||||||| || || |||| ||| |||| || | |||||||| |
Sbjct 86572 TGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGCTGAGTTGAGGCGGT 86513
Query 63856 CCTTATATTTGTTAACTATATCCATGGTGATACTT-GAAATAATCGGAGAAT---GTTTC 63911
| || | | | || || || | ||| | ||| || || || || || | ||||
Sbjct 86512 CTTTGTTCTCGAGGACGATGTCAAGGGT-CTCCTTGGAGATCATGGGGGAGTGGCGTTT- 86455
Query 63912 CCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGttttttt 63971
|| ||| || || |||||| | | |||||||| || ||||| || | ||| |||
Sbjct 86454 --GTTCAGAGGGTTGACGTAGTTGTACAGGTCCTCCATGACATCACTGAACACTTTCTTT 86397
Query 63972 GTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCGGATGT 64031
|| || ||||| || || || ||||| || | |||||| || |||||||| || || |||
Sbjct 86396 GTCTCTTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCATAGTCTGGGTGT 86337
Query 64032 TGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTCTACCGTTGTTACT 64091
| || || ||||||||| || || || ||||| ||||||| || || || || |||
Sbjct 86336 TTGGTTGTGAGAGTGGCTGCGATCTCTGCGGCCAGCGTGTCCAGCTCCACTGTGGTGACT 86277
Query 64092 CCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGGATCTATATGATCCGTG 64151
|| | || | || || || |||||||| | || | || || | | || | |
Sbjct 86276 CCGCTGTACAAACCCTGGATCACCTTCATCGTGATCTGGGCCGGGTCCACAAAGTCAGAG 86217
Query 64152 TTTAAGCCATAACATAATTTTCT-AATACGAGACGTGATTTTATCAAACATGAC 64204
|| | || || || || |||| || ||||| |||||||| || ||||||||
Sbjct 86216 TTCAGCCCGTAGCA-AAGCTTCTGGATGCGAGAGGTGATTTTGTCGAACATGAC 86164
Score = 96.9 bits (106), Expect = 4e-15
Identities = 124/171 (73%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 62062 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62121
|||| ||||| || ||||| || || |||||| || | || || || || ||||| |
Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921
Query 62122 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62181
||| || || || || || ||||||||||| | ||| |||||||| || | || ||||
Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861
Query 62182 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62232
| || | |||||||| | ||||| || | |||| | ||| |||||||
Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810
>seq2122
Length=1387681
Score = 114 bits (126), Expect = 2e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| || ||||| || || || |||||| | || || |||||||||||||| | ||| |
Sbjct 1083632 CCTCATCCCTACTGATCAGCTCATTGGAATAGGTAAGCCCGGGCATTAGGCCTCTCTTCT 1083573
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| |||||| | |||| ||||||||| ||||| ||||||||||| || || || ||||| |
Sbjct 1083572 TGAGCCAATAGATGGCAGCGAATGAGCCAGAGAAGAAGATTCCCTCCACAGCTGCAAAAG 1083513
Query 33446 CAATAAGTCTCTCTCC 33461
| | || || ||| ||
Sbjct 1083512 CCACAATTCGCTCCCC 1083497
>seq963
Length=229635
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || || || |||||||| || || || |||||||| ||||| | ||| |
Sbjct 212701 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 212642
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || || | |||||| || ||||| ||||||||||| || || || |||||||
Sbjct 212641 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 212582
Query 33446 C 33446
|
Sbjct 212581 C 212581
>seq375
Length=30079
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || || || |||||||| || || || |||||||| ||||| | ||| |
Sbjct 25675 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 25734
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || || | |||||| || ||||| ||||||||||| || || || |||||||
Sbjct 25735 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 25794
Query 33446 C 33446
|
Sbjct 25795 C 25795
>seq52
Length=1057507
Score = 111 bits (122), Expect = 2e-19
Identities = 97/121 (80%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||||||||| || || || |||||||| || || || |||||||| ||||| | ||| |
Sbjct 13946 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 14005
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| || || | |||||| || ||||| ||||||||||| || || || |||||||
Sbjct 14006 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 14065
Query 33446 C 33446
|
Sbjct 14066 C 14066
>seq1563
Length=18910200
Score = 93.3 bits (102), Expect = 5e-14
Identities = 98/129 (76%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 63215 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63274
|||||||||||||||||| || || ||||| || || | || || ||||||| || ||
Sbjct 8606310 CACTCGTTTCATAAAGAGGTCTGGGATCCACAGGGCAAAGAACAGGTCTCTGGCCCTCTG 8606369
Query 63275 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63334
||||| || ||||| |||||||| | || | |||| | | | ||| ||||||||||
Sbjct 8606370 CTCCTCTTTACCTGTGTTCTTTTTCAACTCTAAGAACTCAAACACATCGTAATGCCACGG 8606429
Query 63335 TTCCAAGTA 63343
|||| |||
Sbjct 8606430 CTCCAGGTA 8606438
Score = 93.3 bits (102), Expect = 5e-14
Identities = 120/166 (72%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014
||||||||| || || || || ||||| || || || || ||||||| || || || |
Sbjct 8608113 CACTAAATATCTTCTTGGTCTCTTTGTGCAGGTTAGACACAGCTATTCGTGCAGCAAGGA 8608172
Query 64015 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64074
| ||||| || || |||| || || ||||| || | || ||||||||||||||||
Sbjct 8608173 TTGCATAGTCAGGGTGTTTGGTGGTGAGGGTGGCAGCAGTCTCCGCTGCCAGAGTGTCCA 8608232
Query 64075 ATTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCAT 64120
|| || || || |||||| | || | || || || ||||||||
Sbjct 8608233 GCTCCACAGTAGTGACTCCACTGTACAGACCCTGGATCACCTTCAT 8608278
>seq689
Length=20366
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420
|| |||||||| ||||| ||||| || ||||| || || | |||||| || ||||| |||
Sbjct 19580 AGGCCGGGCATCAGGCCTCGCTTCTTTAGCCAGAAGATCGCAGCGAACGAACCAGAGAAG 19521
Query 33421 AAGATTCCTTCTACTGCAGCAAAGGC 33446
| |||||| || || |||||||||||
Sbjct 19520 ATGATTCCCTCCACGGCAGCAAAGGC 19495
>seq678
Length=440451
Score = 84.2 bits (92), Expect = 3e-11
Identities = 70/86 (81%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420
|| |||||||| ||||| ||||| || ||||| || || | |||||| || ||||| |||
Sbjct 439223 AGGCCGGGCATCAGGCCTCGCTTCTTTAGCCAGAAGATCGCAGCGAACGAACCAGAGAAG 439164
Query 33421 AAGATTCCTTCTACTGCAGCAAAGGC 33446
| |||||| || || |||||||||||
Sbjct 439163 ATGATTCCCTCCACGGCAGCAAAGGC 439138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622917547713280
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