Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2387 190 5e-43 >seq2387 Length=643009 Score = 190 bits (210), Expect = 5e-43 Identities = 603/924 (65%), Gaps = 32/924 (3%) Strand=Plus/Plus Query 363400 AAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTGATATTGTTGAACGCCCGCAG 363459 ||||| |||||| |||||||| | ||||| | | | | || || || ||| Sbjct 86572 AAGACTCTGGAGAGGTCCTACCTGTTGAAGATCAACAATAAAGTGGCCGAGCGGCCTCAG 86631 Query 363460 CATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAA 363519 || ||| ||||| | || ||| | || ||||| | | ||| | || || || || || Sbjct 86632 CACATGCTAATGAGAGTGGCTGTCGGCATCCACAGAACAGATATCGAGGCGGCCATCGAG 86691 Query 363520 ACATATAAGCT--TCTAAGTGCTCGTGTATTCACGCACGCCACGCCAACAATGTACAATG 363577 || || || || ||| || | ||| ||||| |||||| | || ||| | | ||||| Sbjct 86692 ACCTACAACCTGCTCTCAGAGAA-GTGG-TTCACCCACGCCTCTCCTACACTCTTCAATG 86749 Query 363578 CTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAAGGACGATTCCA 363637 ||||||| | |||||| |||| ||||| || || ||||||||||| || Sbjct 86750 CTGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCA 86809 Query 363638 TCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAA 363697 |||| || || | |||||| || ||| | || || || || ||||| || || |||| Sbjct 86810 TCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCGGCCGGAGGAA 86869 Query 363698 TTGGTGTATCGATCCACAATGTTCGTGCA-CAGAAC-------AGTTACATTCGCGGCAC 363749 | || || || || | |||| |||| | || |||||| ||| || Sbjct 86870 TCGGCGTGGCGGTCAGC--------TGCATCAGATCGACGGGGAGCTACATTGCCGGAAC 86921 Query 363750 AGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTA 363809 || | || || |||||||| |||||||| | || | |||| || || | || Sbjct 86922 CAATGGCAATTCCAACGGGCTGGTCCCCATGCTGAGAGTTTACAACAACACGGCCCGTTA 86981 Query 363810 CGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCA 363869 ||||||||||||||| ||| | || || || || ||||| || ||||| || Sbjct 86982 CGTCGACCAGGGTGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCATGGCA 87041 Query 363870 TGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGC 363929 || |||| || || || ||||| ||| ||||| || || ||||| | || Sbjct 87042 CTTTGACGTTTTCGACTTCCTGGAGCTGAAGAAGAACACAGGGAAGGAGGAGCAAAGAGC 87101 Query 363930 ACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAG-GCAG 363988 | ||||| ||||| || || ||| | | ||| || |||||| | |||||| ||| Sbjct 87102 CAGAGATCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGGGTGGAGAGCAA 87161 Query 363989 GTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTG 364048 |||| | |||| || | || || |||| || || || || ||| ||||| | Sbjct 87162 CCAAGACT-GGTCCCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTGCTGGGGAG 87220 Query 364049 ACGACTATGTTG--CTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAAT 364106 | || | | | ||||| || ||| || || |||||| | || || ||| | | Sbjct 87221 AGGAGTTCGAGGAGCTCTACACCAAA--TACGAGAAGGAGGGGAGGG-TC--AAGCGAGT 87275 Query 364107 TCCC---GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACC 364163 || ||| |||| |||| ||||| || || || |||| || || || ||||| Sbjct 87276 GGTGAAGGCTCAGCAGCTGTGGTACGCCATTATCGAGTCCCAGACAGAAACCGGTACACC 87335 Query 364164 CTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 || ||| |||||||||| | |||||| | ||| |||||||||| |||| || || || Sbjct 87336 ATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCAT 87395 Query 364224 TCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGT 364283 | |||||||| || || || || ||||||||||| || ||| || || Sbjct 87396 CAAATGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGAGGATGAGGTAGCGGT 87455 Query 364284 ATGTAACCTTGCGTCGATCGCGCT 364307 ||||| || || || ||||| || Sbjct 87456 CTGTAATCTGGCCTCCATCGCTCT 87479 Score = 87.8 bits (96), Expect = 5e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 364967 TTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAACTCTCA 365026 ||||||| ||| |||||| | ||||||||||| |||||||| ||| | || | Sbjct 88810 TTCCAGATGATTTGAAGCAGCTGTACAAAACCGTGTGGGAAATCTCCCAGAAGACCATAC 88869 Query 365027 TTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCA 365086 | | ||||| ||||| ||||| || || || ||||||||||| | ||| | || Sbjct 88870 TGAAGATGGCTGCCGACCGCGGAGCCTTCATTGACCAGAGCCAGTCCCTGAACATCCACA 88929 Query 365087 TGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTGGAAA 365139 | | |||||| || || ||| || || |||||| |||||||| |||||| Sbjct 88930 TCGCCGAGCCAAACTACGGCAAACTGACCAGCATGCACTTCTACGGCTGGAAA 88982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303290009377856