Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq14 93.3 4e-14
seq1563 86.0 5e-12
>seq14
Length=1339370
Score = 93.3 bits (102), Expect = 4e-14
Identities = 164/237 (69%), Gaps = 8/237 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| |||| || || ||||||| | || || ||| |
Sbjct 521259 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 521200
Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| |||||| ||| |||| || | || || || ||||| || || || ||
Sbjct 521199 GACACCATCGAGAACGTCA---AAGCCAAGATCCAG-GATAAGGAAGGAATCCCTCCAGA 521144
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| | || |||||||| || || | ||||||| ||||| | || ||
Sbjct 521143 CCAGCAGCGTCTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 521084
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231
||| || || || || ||||| || ||| | ||||| | || ||||||||||| ||
Sbjct 521083 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGAGGAGGAAACTA 521027
>seq1563
Length=18910200
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || ||||||| | || || || | |
Sbjct 5356228 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 5356169
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || ||| | ||| || ||| ||||| ||||| ||||| || |||||
Sbjct 5356168 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 5356109
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || ||||||||||| || | ||||||| ||||| | || |||||
Sbjct 5356108 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 5356049
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || ||||| || ||| | || ||
Sbjct 5356048 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 5356017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433307889247520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |