Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq14 93.3 4e-14 seq1563 86.0 5e-12 >seq14 Length=1339370 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/237 (69%), Gaps = 8/237 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| |||| || || ||||||| | || || ||| | Sbjct 521259 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCAGC 521200 Query 25059 GACACTATCGAG----TCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| |||||| ||| |||| || | || || || ||||| || || || || Sbjct 521199 GACACCATCGAGAACGTCA---AAGCCAAGATCCAG-GATAAGGAAGGAATCCCTCCAGA 521144 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || |||||||| || || | ||||||| ||||| | || || Sbjct 521143 CCAGCAGCGTCTCATCTTTGCCGGGAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTA 521084 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAATTA 25231 ||| || || || || ||||| || ||| | ||||| | || ||||||||||| || Sbjct 521083 CAACATCCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGTCTGAGAGGAGGAAACTA 521027 >seq1563 Length=18910200 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | || || || | | Sbjct 5356228 ATGCAGATCTTTGTCAAGACCCTTACTGGCAAGACCATCACCCTGGAGGTTGAACCCAGT 5356169 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| | ||| || ||| ||||| ||||| ||||| || ||||| Sbjct 5356168 GACACCATTGAGAATGTCAAGGCCAAGATCCAGGACAAGGAAGGCATTCCCCCAGACCAG 5356109 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || ||||||||||| || | ||||||| ||||| | || ||||| Sbjct 5356108 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTACAAC 5356049 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || ||| | || || Sbjct 5356048 ATCCAGAAGGAGTCCACCCTCCATCTTGTCCT 5356017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433307889247520