Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 504 1e-137
seq963 118 2e-21
seq375 118 2e-21
seq52 118 2e-21
seq1563 95.1 2e-14
seq2122 84.2 4e-11
>seq2387
Length=643009
Score = 504 bits (558), Expect = 1e-137
Identities = 934/1354 (69%), Gaps = 40/1354 (3%)
Strand=Plus/Minus
Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150
||||| | ||| |||||||| || || || | ||| ||||| ||||||| || | |
Sbjct 88040 TTCACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 87981
Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210
|||||| ||| |||||||||| ||||| || ||| || || ||||| || | || |
Sbjct 87980 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 87921
Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATG--CGGAGTCTG-AGCTCGTTCCAGTCC 244267
||||| |||||||| || ||||| | ||| | || | |||| ||||||||
Sbjct 87920 AGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAGGAGCT---TCCAGTCC 87864
Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327
|||| | | || || | || | |||||||||| |||| || | || |||
Sbjct 87863 CACAGGTC--AGTGGGCGTCTTCT-------CCCACATGTCGTACTGGAGGATGCCTTTG 87813
Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCT 244386
||||||||| ||| | ||| ||| |||||| ||| || | | ||||||| |||||
Sbjct 87812 CTGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGA-GCTCGGCAGCCAGCTCGCAGCT 87754
Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCT 244445
| | || ||||||||||||||||||||||| |||||| |||||| | || | ||||
Sbjct 87753 CGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCA-GCAGCTGAGCCT 87695
Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505
| | | |||||| | ||||| |||||| | || |||| |||||||| ||||
Sbjct 87694 CGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGA 87635
Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565
| || || || ||||| ||||||||||| | ||||| ||||| || || ||||
Sbjct 87634 TTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAGTAGTTAA 87575
Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGCGGACGACGTCGGCCAGCAGCTGA 244624
||| || | |||||| ||||| | ||| | | || | || | |||||| | |
Sbjct 87574 TGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTC-ACATACGCCAGCTTTTTA 87516
Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684
||||| | || || | |||| | ||| || |||||| |||| |
Sbjct 87515 AAGTCAAA-----AG------TCCGTTCAGGTG----TGACATACATGTTGAGAGCGATG 87471
Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744
|||||| || ||||| || ||||| ||| | ||||||| | || || || ||||||
Sbjct 87470 GAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAG 87411
Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804
||||| ||||| |||||||||||||||| ||| || ||| ||| ||||||||||||
Sbjct 87410 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 87351
Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864
||||| |||||| | || ||||| || ||||| ||| | | || ||| ||
Sbjct 87350 TTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGC 87291
Query 244865 TCCCTAGCCTTGACCGTCCTGCGAG-CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923
| | |||||| ||| | || | || | ||||| |||||| |||||| || |
Sbjct 87290 TGCTGAGCCTTCACCACTC-GCTTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTC 87232
Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983
||||||||| |||||| |||||| || ||||||||| ||| ||||| ||
Sbjct 87231 CTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGA 87172
Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043
||| || | | || ||||||| |||||| | |||||||||||| ||||| | |||
Sbjct 87171 CCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAA 87112
Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103
|| || |||| || ||||| ||| || ||||||||| ||||||||| ||||| ||
Sbjct 87111 AAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAA 87052
Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163
||||| | |||||| ||||||| ||| | |||| ||| ||||| | ||||||||| ||
Sbjct 87051 AACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCACC 86992
Query 245164 CTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222
|||||| || | | || | |||| | | | ||| | || || | ||||| |
Sbjct 86991 CTGGTCGACGTAACGGGCCGTG-TTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTGG 86933
Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGC 245282
| | ||| ||||| || |||||| ||| | |||| | ||||| | || ||
Sbjct 86932 AATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGC 86873
Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342
| | ||| ||||| ||||||||||||||||| ||| | ||||| ||||| |
Sbjct 86872 CGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTT 86813
Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGC 245402
| |||||||| ||||||| |||||| |||||| ||||||||| ||| || | | |
Sbjct 86812 CGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTC 86753
Query 245403 ACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436
| ||||| || || || ||||||||| ||
Sbjct 86752 CAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAA 86719
>seq963
Length=229635
Score = 118 bits (130), Expect = 2e-21
Identities = 104/127 (82%), Gaps = 2/127 (2%)
Strand=Plus/Plus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| |||||| |||| || ||||| ||||||||||| || | ||||| | |||||||
Sbjct 212576 TGGTGGCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCT 212635
Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| ||| ||| | ||||||||| || |||||||| ||||| |||||||||||
Sbjct 212636 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 212694
Query 42825 GACGAGG 42831
|||||||
Sbjct 212695 GACGAGG 212701
Score = 93.3 bits (102), Expect = 8e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129
|||||||||||| |||||||||||||| ||||||| ||||||||||| || ||||||||
Sbjct 213868 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 213927
Query 43130 CGTCGCCGACTACCAG 43145
|| | ||| ||||||
Sbjct 213928 GGTGGGCGAGTACCAG 213943
>seq375
Length=30079
Score = 118 bits (130), Expect = 2e-21
Identities = 104/127 (82%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| |||||| |||| || ||||| ||||||||||| || | ||||| | |||||||
Sbjct 25800 TGGTGGCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCT 25741
Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| ||| ||| | ||||||||| || |||||||| ||||| |||||||||||
Sbjct 25740 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 25682
Query 42825 GACGAGG 42831
|||||||
Sbjct 25681 GACGAGG 25675
Score = 93.3 bits (102), Expect = 8e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129
|||||||||||| |||||||||||||| ||||||| ||||||||||| || ||||||||
Sbjct 24532 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 24473
Query 43130 CGTCGCCGACTACCAG 43145
|| | ||| ||||||
Sbjct 24472 GGTGGGCGAGTACCAG 24457
>seq52
Length=1057507
Score = 118 bits (130), Expect = 2e-21
Identities = 104/127 (82%), Gaps = 2/127 (2%)
Strand=Plus/Minus
Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765
|||| |||||| |||| || ||||| ||||||||||| || | ||||| | |||||||
Sbjct 14071 TGGTGGCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCT 14012
Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824
|||| ||| ||| ||| | ||||||||| || |||||||| ||||| |||||||||||
Sbjct 14011 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 13953
Query 42825 GACGAGG 42831
|||||||
Sbjct 13952 GACGAGG 13946
Score = 93.3 bits (102), Expect = 8e-14
Identities = 66/76 (87%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129
|||||||||||| |||||||||||||| ||||||| ||||||||||| || ||||||||
Sbjct 13012 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 12953
Query 43130 CGTCGCCGACTACCAG 43145
|| | ||| ||||||
Sbjct 12952 GGTGGGCGAGTACCAG 12937
>seq1563
Length=18910200
Score = 95.1 bits (104), Expect = 2e-14
Identities = 88/112 (79%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764
|||||| || | | | ||||||| || ||||| ||||| || || ||| | ||||||||
Sbjct 8605785 CACCTCGTCTGGGCTTGTGTACTCTACTATCTCTGTGCACAGATTGCTGGATTTGATGGT 8605844
Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816
|||||| | ||| || ||| ||| ||| |||||||||||||||||||||
Sbjct 8605845 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTACAGGCGTCCTTGTAGAGCATG 8605896
>seq2122
Length=1387681
Score = 84.2 bits (92), Expect = 4e-11
Identities = 95/125 (76%), Gaps = 2/125 (2%)
Strand=Plus/Plus
Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767
|| || ||| | || || ||||| ||||||||||| ||| | ||||| |||||| |||
Sbjct 1083509 GTGGCTTTTGCAGCTGTGGAGGGAATCTTCTTCTCTGGCTCATTCGCTGCCATCTATTGG 1083568
Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826
|||||| ||| ||| | |||||||| || |||| || || || || ||||| |||||
Sbjct 1083569 CTCAAGAAGAGAGGCCT-AATGCCCGGGCTTACCTATTCCAATGAGCTGATCAGTAGGGA 1083627
Query 42827 CGAGG 42831
||||
Sbjct 1083628 TGAGG 1083632
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944294249454080
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