Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2387 504 1e-137 seq963 118 2e-21 seq375 118 2e-21 seq52 118 2e-21 seq1563 95.1 2e-14 seq2122 84.2 4e-11 >seq2387 Length=643009 Score = 504 bits (558), Expect = 1e-137 Identities = 934/1354 (69%), Gaps = 40/1354 (3%) Strand=Plus/Minus Query 244091 TTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGC 244150 ||||| | ||| |||||||| || || || | ||| ||||| ||||||| || | | Sbjct 88040 TTCACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCC 87981 Query 244151 TCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACC 244210 |||||| ||| |||||||||| ||||| || ||| || || ||||| || | || | Sbjct 87980 TCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGC 87921 Query 244211 AGCAGACTGTTCCTCACGCCGTGCCTCTGGATG--CGGAGTCTG-AGCTCGTTCCAGTCC 244267 ||||| |||||||| || ||||| | ||| | || | |||| |||||||| Sbjct 87920 AGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAGGAGCT---TCCAGTCC 87864 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 |||| | | || || | || | |||||||||| |||| || | || ||| Sbjct 87863 CACAGGTC--AGTGGGCGTCTTCT-------CCCACATGTCGTACTGGAGGATGCCTTTG 87813 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGG-GCCAGCTTACAGCT 244386 ||||||||| ||| | ||| ||| |||||| ||| || | | ||||||| ||||| Sbjct 87812 CTGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGA-GCTCGGCAGCCAGCTCGCAGCT 87754 Query 244387 CTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGG-GCCT 244445 | | || ||||||||||||||||||||||| |||||| |||||| | || | |||| Sbjct 87753 CGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCA-GCAGCTGAGCCT 87695 Query 244446 TGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGA 244505 | | | |||||| | ||||| |||||| | || |||| |||||||| |||| Sbjct 87694 CGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGA 87635 Query 244506 TGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGC 244565 | || || || ||||| ||||||||||| | ||||| ||||| || || |||| Sbjct 87634 TTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAGTAGTTAA 87575 Query 244566 CGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGCGGACGACGTCGGCCAGCAGCTGA 244624 ||| || | |||||| ||||| | ||| | | || | || | |||||| | | Sbjct 87574 TGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTC-ACATACGCCAGCTTTTTA 87516 Query 244625 AAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACG 244684 ||||| | || || | |||| | ||| || |||||| |||| | Sbjct 87515 AAGTCAAA-----AG------TCCGTTCAGGTG----TGACATACATGTTGAGAGCGATG 87471 Query 244685 CTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAG 244744 |||||| || ||||| || ||||| ||| | ||||||| | || || || |||||| Sbjct 87470 GAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAG 87411 Query 244745 AGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCC 244804 ||||| ||||| |||||||||||||||| ||| || ||| ||| |||||||||||| Sbjct 87410 AGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCT 87351 Query 244805 TTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGG 244864 ||||| |||||| | || ||||| || ||||| ||| | | || ||| || Sbjct 87350 TTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGC 87291 Query 244865 TCCCTAGCCTTGACCGTCCTGCGAG-CCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 | | |||||| ||| | || | || | ||||| |||||| |||||| || | Sbjct 87290 TGCTGAGCCTTCACCACTC-GCTTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTC 87232 Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 ||||||||| |||||| |||||| || ||||||||| ||| ||||| || Sbjct 87231 CTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGA 87172 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| || | | || ||||||| |||||| | |||||||||||| ||||| | ||| Sbjct 87171 CCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAA 87112 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 || || |||| || ||||| ||| || ||||||||| ||||||||| ||||| || Sbjct 87111 AAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAA 87052 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 ||||| | |||||| ||||||| ||| | |||| ||| ||||| | ||||||||| || Sbjct 87051 AACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCACC 86992 Query 245164 CTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAG 245222 |||||| || | | || | |||| | | | ||| | || || | ||||| | Sbjct 86991 CTGGTCGACGTAACGGGCCGTG-TTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTGG 86933 Query 245223 AGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACATGC 245282 | | ||| ||||| || |||||| ||| | |||| | ||||| | || || Sbjct 86932 AATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCGCCACGC 86873 Query 245283 CTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTATGCCCT 245342 | | ||| ||||| ||||||||||||||||| ||| | ||||| ||||| | Sbjct 86872 CGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTT 86813 Query 245343 CCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGGGGCTGC 245402 | |||||||| ||||||| |||||| |||||| ||||||||| ||| || | | | Sbjct 86812 CGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTC 86753 Query 245403 ACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 | ||||| || || || ||||||||| || Sbjct 86752 CAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAA 86719 >seq963 Length=229635 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| ||||||||||| || | ||||| | ||||||| Sbjct 212576 TGGTGGCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCT 212635 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 212636 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 212694 Query 42825 GACGAGG 42831 ||||||| Sbjct 212695 GACGAGG 212701 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 213868 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 213927 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 213928 GGTGGGCGAGTACCAG 213943 >seq375 Length=30079 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| ||||||||||| || | ||||| | ||||||| Sbjct 25800 TGGTGGCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCT 25741 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 25740 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 25682 Query 42825 GACGAGG 42831 ||||||| Sbjct 25681 GACGAGG 25675 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 24532 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 24473 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 24472 GGTGGGCGAGTACCAG 24457 >seq52 Length=1057507 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| |||| || ||||| ||||||||||| || | ||||| | ||||||| Sbjct 14071 TGGTGGCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCT 14012 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 14011 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 13953 Query 42825 GACGAGG 42831 ||||||| Sbjct 13952 GACGAGG 13946 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 13012 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 12953 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 12952 GGTGGGCGAGTACCAG 12937 >seq1563 Length=18910200 Score = 95.1 bits (104), Expect = 2e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | | ||||||| || ||||| ||||| || || ||| | |||||||| Sbjct 8605785 CACCTCGTCTGGGCTTGTGTACTCTACTATCTCTGTGCACAGATTGCTGGATTTGATGGT 8605844 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||||| | ||| || ||| ||| ||| ||||||||||||||||||||| Sbjct 8605845 GCCCAGATTCTGCTGGTTGCTCTTCCTGTTACAGGCGTCCTTGTAGAGCATG 8605896 >seq2122 Length=1387681 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 || || ||| | || || ||||| ||||||||||| ||| | ||||| |||||| ||| Sbjct 1083509 GTGGCTTTTGCAGCTGTGGAGGGAATCTTCTTCTCTGGCTCATTCGCTGCCATCTATTGG 1083568 Query 42768 CTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| ||| ||| | |||||||| || |||| || || || || ||||| ||||| Sbjct 1083569 CTCAAGAAGAGAGGCCT-AATGCCCGGGCTTACCTATTCCAATGAGCTGATCAGTAGGGA 1083627 Query 42827 CGAGG 42831 |||| Sbjct 1083628 TGAGG 1083632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944294249454080