Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq1756 98.7 9e-16 >seq1756 Length=808860 Score = 98.7 bits (108), Expect = 9e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 20276 TAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGA 20335 |||||||| || || ||||| ||||||| ||||||||| ||||||| ||| ||||||||| Sbjct 97611 TAGCTGGCGATATTGAAAGGCACTCCCAGACCCATGTCGCCCGACCGCTGGTACAGCTGA 97552 Query 20336 CAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCC 20395 || || |||||||| ||| || || || || || | ||| ||||| || || ||| Sbjct 97551 CACGACAGCTCACCATCACACACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCC 97492 Query 20396 AT 20397 || Sbjct 97491 AT 97490 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 20527 GTACGCCGCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCT 20586 |||| | ||||| ||||||||||||||||||||||| |||||||||| || |||||| Sbjct 97160 GTACTCTGCCCCGAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGGTCGCCCTCCTC 97101 Query 20587 TCTGTGCGCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTT 20646 ||||| || | || | | ||||||| |||| ||| || || ||||| ||||| Sbjct 97100 TCTGTCCGTGAACCCAAGGTTGTCCAGGAAATCCCGGGACCCGTTGGCATCCCAAATCTT 97041 Query 20647 GACTCCTGTTCTTGAAAGCTCCCTGG 20672 || ||| | ||| |||||| ||| Sbjct 97040 CACCCCTTTCGCTGAGAGCTCCTTGG 97015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441351790654720