Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq2387 214 2e-50 seq1563 100 3e-16 seq963 100 3e-16 seq375 100 3e-16 seq52 100 3e-16 >seq2387 Length=643009 Score = 214 bits (236), Expect = 2e-50 Identities = 835/1300 (64%), Gaps = 32/1300 (2%) Strand=Plus/Minus Query 113942 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAG 114001 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| |||||||||||| Sbjct 88001 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 87942 Query 114002 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 114061 || |||||||| || |||| || |||||||| | || || | || || ||| Sbjct 87941 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCC 87882 Query 114062 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGA 114119 || ||| | |||||| | | | || | | | | || |||||| || |||||| Sbjct 87881 TTCAGGAGCTTCCAGTCCCACAGGTCAG--TGGGCGTCTTCTCCCACATGTCGTACTGGA 87824 Query 114120 GGATACCTTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCA 114179 |||| |||| | | | || || || | |||||||||| ||||| | | |||| Sbjct 87823 GGATGCCTTTGCTGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAGCCA 87764 Query 114180 ATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTG 114239 ||| |||||||||| ||||| |||| || || |||||||| || | | |||| Sbjct 87763 GCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCA 87704 Query 114240 CCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTT 114299 || |||||| | ||||| | | || || || || |||| || | ||| | Sbjct 87703 GCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCT 87644 Query 114300 GGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGAT 114359 | ||||||| || ||||| | || | | | || ||||| || ||| |||| Sbjct 87643 GCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGGAT 87584 Query 114360 AAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAA 114419 | | || | || || | | | || || |||||| || || || || | | | Sbjct 87583 AGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACATACGCCA 87524 Query 114420 GCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGATTG 114476 |||||| | |||||| | || |||| |||||||| | || ||||| | Sbjct 87523 GCTTTTTAAAGTCAAAAGTCCG------TTCAGGTGTGACATACATGTTGAGAGCGATGG 87470 Query 114477 ACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACA 114536 | ||||||||||| || | |||||||| ||||| || | ||||| || || | Sbjct 87469 AGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAGA 87410 Query 114537 AATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCT 114596 || | || |||||||||| ||||| || || ||| |||| || || || | Sbjct 87409 GGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTT 87350 Query 114597 TGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CA 114655 |||| ||||||||||| || || || || || ||||||| || ||| || | ||| | | Sbjct 87349 TGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGCT 87290 Query 114656 TCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCT 114715 | | | || || | || ||| | | |||||||| |||||| || |||||||| | Sbjct 87289 GCTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCTCC 87231 Query 114716 TCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGAC 114775 || ||||| || ||| | ||| ||||| || || | || || | || ||| Sbjct 87230 TCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGAC 87171 Query 114776 CA---TTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAG 114832 || ||| | |||| || | ||||||||| | ||| |||||||| || || || Sbjct 87170 CAGTCTTGGTTGCTCTCC---ACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAG 87114 Query 114833 AAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 114891 || ||||| | | | ||| || | |||| || || || ||||| ||||| Sbjct 87113 AAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTCTTCTTCAGCTCCAGGAAGTC 87055 Query 114892 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGACGAC 114947 | | || |||||| || |||||||||| |||| | || || | | | Sbjct 87054 GAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTG-C 86996 Query 114948 CAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCAT 115007 || |||||| || || | || ||| || | || | ||||| || | | || | Sbjct 86995 CACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGT 86936 Query 115008 CAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGA--CATCATGGATGTG 115065 || | |||||| || || ||| | | | ||||| || | || Sbjct 86935 TGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGC--TGACCGC 86878 Query 115066 CATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGAT 115125 || || || || || ||| | || ||||| | ||||||| | | || || | || || Sbjct 86877 CACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAAT 86818 Query 115126 CCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGG 115185 || ||||| ||| |||| | |||| ||||||||||| |||| |||||||| Sbjct 86817 GCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTT 86758 Query 115186 TGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 115225 || ||||| |||||||| || || | |||||| ||||| Sbjct 86757 GGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAAC 86718 >seq1563 Length=18910200 Score = 100 bits (110), Expect = 3e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 113941 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGA 114000 |||||| || | ||||||| ||||||| |||||||||| |||| ||| ||||| ||||| Sbjct 8604819 ATAGATGTTACTGGTGTATGCCTCAAAGGACTCATTGTTGCCCAGGATCTGGGCAGTGGA 8604878 Query 114001 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 114033 ||||||||||| || |||| ||| |||||||| Sbjct 8604879 AGCTGTGGGCATTGGGGCCAAGAGCAGGCTGTT 8604911 >seq963 Length=229635 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 212701 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 212642 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| |||||| || ||||| ||||||||||||||||||||| || || | Sbjct 212641 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 212582 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 212581 CCACCACACGCTC 212569 >seq375 Length=30079 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 25675 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 25734 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| |||||| || ||||| ||||||||||||||||||||| || || | Sbjct 25735 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 25794 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 25795 CCACCACACGCTC 25807 >seq52 Length=1057507 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 126066 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTCT 126125 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 13946 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 14005 Query 126126 TCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAACG 126185 ||| |||||| |||||| || ||||| ||||||||||||||||||||| || || | Sbjct 14006 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 14065 Query 126186 CAAAGAGACGCTC 126198 | | | |||||| Sbjct 14066 CCACCACACGCTC 14078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597325165968640