Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq14 125 7e-24 seq1563 116 4e-21 seq2387 82.4 8e-11 >seq14 Length=1339370 Score = 125 bits (138), Expect = 7e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 521048 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 521107 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| |||||| | ||||| ||||||||||| ||||| |||||||| || || Sbjct 521108 TCCAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTATCC 521167 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || ||| | || || | || || || || | || | ||| Sbjct 521168 TGGA-TCTTGGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGT 521226 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| |||| || || ||||| || ||||| Sbjct 521227 CTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 521259 Score = 118 bits (130), Expect = 1e-21 Identities = 160/223 (72%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || || || || |||||||| || | | ||| || ||||| Sbjct 521504 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTACGGCCGTCT 521563 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| ||||| ||| | || |||| ||||||||| ||||| ||||||||||| || Sbjct 521564 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTATCC 521623 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | || || || || | ||| | |||| Sbjct 521624 TGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCGACCTCCAAAGTGATGGTC 521683 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAATAATGA 64454 || || |||| || || || || || ||||| |||| | ||| Sbjct 521684 TTACCAGTCAGGGTCTTCACAAAGATCTGCATCTTAACACTGA 521726 >seq1563 Length=18910200 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 5350606 AGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 5350665 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 5350666 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 5350725 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || |||| || || || || | || | |||| Sbjct 5350726 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTC 5350785 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || ||||| || ||||| Sbjct 5350786 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 5350817 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 5356017 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 5356076 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 5356077 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 5356136 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || |||| || || || || | || | |||| Sbjct 5356137 TGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGTC 5356196 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || || || || ||||| Sbjct 5356197 TTGCCAGTAAGGGTCTTGACAAAGATCTGCAT 5356228 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 5357157 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 5357216 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 5357217 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 5357276 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || ||| | ||||| | || || || || | || | ||| Sbjct 5357277 TGGA-TCTTGGCTTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGT 5357335 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 |||||| || | ||||| || || || ||||| || Sbjct 5357336 CTTGCCAGTGAGGGTTTTCACAAAGATCTGCATGTT 5357371 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | || || ||||| | || || || || || |||||||| || | Sbjct 5351046 ACCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 5351105 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| ||||||||||| ||| | || |||| ||||||||| || || Sbjct 5351106 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGG 5351165 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || ||| ||| ||| ||| | || |||| | || || Sbjct 5351166 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCAAC 5351225 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | || || || || || ||||| Sbjct 5351226 CTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 5351273 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 |||||| | || | || || ||||| | || || || || || |||||||| || | Sbjct 5356685 ACCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 5356744 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| ||||||||||||||| | || | || ||||||||| || || Sbjct 5356745 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 5356804 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| ||||| || || || || || ||| ||| ||| | ||||| | | || || Sbjct 5356805 AATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTCTCAATGGTATCGCTTGGCTCGAC 5356864 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | ||||||||| || | ||||| || || || ||||| Sbjct 5356865 CTCCAGGGTGATGGTCTTGCCTGTGAGGGTTTTCACAAAGATCTGCAT 5356912 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 5355789 AGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 5355848 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 5355849 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 5355908 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | | || || || | || | |||| Sbjct 5355909 TGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTC 5355968 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | ||||| || || || ||||| Sbjct 5355969 TTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 5356000 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 5356245 AGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 5356304 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 5356305 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 5356364 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || ||| | || || | | || || || | || | |||| Sbjct 5356365 TGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTC 5356424 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||||| | || || ||||| || ||||| Sbjct 5356425 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 5356456 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 5356473 AGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 5356532 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 5356533 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 5356592 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | | || || || | || | |||| Sbjct 5356593 TGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGACCTCCAGGGTGATGGTC 5356652 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || ||||| || ||||| Sbjct 5356653 TTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 5356684 Score = 102 bits (112), Expect = 8e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || |||||||| || | || |||||| | ||| Sbjct 5350834 AGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 5350893 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 5350894 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 5350953 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || | | || ||||| || ||| | || |||| | || || || | || | ||| Sbjct 5350954 TGGA-TCTTGGCTTTCACGTTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGT 5351012 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | || || || || || ||||| Sbjct 5351013 CTTGCCTGTAAGGGTCTTGACAAAGATCTGCAT 5351045 Score = 98.7 bits (108), Expect = 1e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | || || || || || || ||||| || | || |||||| | ||| Sbjct 5356929 AGGACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATCT 5356988 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||| ||| | || |||| ||||||||| || ||||| ||||| || || Sbjct 5356989 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCC 5357048 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | || || | | || || || | || | |||| Sbjct 5357049 TGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGTC 5357108 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||||| || | || || || || || ||||| Sbjct 5357109 TTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 5357140 >seq2387 Length=643009 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 154624 TGTATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGAT 154683 |||||| || ||||||| ||| | || |||||| |||||||||||||| | ||| | Sbjct 87433 TGTATTCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGT 87374 Query 154684 TCGATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGG 154743 | || ||||||| ||||||||||||| ||||| || || || ||||| |||| Sbjct 87373 TGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGG 87314 Query 154744 TTTCAATAAT 154753 || ||||| Sbjct 87313 ACTCGATAAT 87304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499621016907520