Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2387 197 1e-45 >seq2387 Length=643009 Score = 197 bits (218), Expect = 1e-45 Identities = 952/1502 (63%), Gaps = 35/1502 (2%) Strand=Plus/Plus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGCAGG 93777 ||| | | ||||| |||||| |||||||||| ||| ||||| | ||||| | | Sbjct 86554 TACAACTTCTTTGGCTTCAAGACTCTGGAGAGGTCCTACCTGTTGAAGATCAACAATAAA 86613 Query 93778 GTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGAC 93837 || ||||||| || || || |||| ||| | || || |||| || ||| | || Sbjct 86614 GTGGCCGAGCGGCCTCAGCACATGCTAATGAGAGTGGCTGTCGGCATCCACAGAACAGAT 86673 Query 93838 ATGCCGAATGTTTTGCGGGCTTTCAGAG-----ACATGCGG---GACAAGAGGTATACCA 93889 || ||| |||| | | ||| || ||| || ||| ||| ||| Sbjct 86674 AT--CGAG------GCGGCCATCGAGACCTACAACCTGCTCTCAGAGAAGTGGTTCACCC 86725 Query 93890 TGGCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCC 93949 ||| | || || || ||||| || || ||| ||||||| |||| || |||| Sbjct 86726 ACGCCTCTCCTACACTCTTCAATGCTGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCC 86785 Query 93950 TGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGA 94009 || | | | |||| |||| |||| || |||| |||| || ||| | || || Sbjct 86786 TGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCC 86845 Query 94010 CCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTT 94069 |||||| |||| || || |||||||| | ||| | | | | | | ||| Sbjct 86846 TCATCTCCAAATCGGCCGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATCGACGGGGA 86905 Query 94070 CCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCA 94129 |||||| ||| |||||||||| |||||||| || ||||| ||||| | || | || Sbjct 86906 GCTACATTGCCGGAACCAATGGCAATTCCAACGGGCTGGTCCCCATGCTGAGAGTTTACA 86965 Query 94130 ACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCT 94189 ||||| |||| || ||||| ||||||||||| | ||| || | ||||| | | Sbjct 86966 ACAACACGGCCCGTTACGTCGACCAGGGTGGCAACAAGAGACCCGGAGCCTTCGCCATGT 87025 Query 94190 ATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCA 94249 | || ||||| |||||| ||||| | ||| | || ||| |||||| || | Sbjct 87026 ACCTGGAGCCATGGCACTTTGACGTTTTCGACTTCCTGGAGCTGAAGAAGAACACAGGGA 87085 Query 94250 ACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGA 94309 | || | | || |||||||| || |||||||| || ||| | || ||| | || |||| Sbjct 87086 AGGAGGAGCAAAGAGCCAGAGATCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGA 87145 Query 94310 AACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGT 94369 | | || |||| ||| | |||| || | ||||| || || || ||||| ||| Sbjct 87146 AGAGGGTGGAGAGCAACCAAGACTGGTCCCTGATGTGTCCGAACGAGTGCCCCGGGCTGG 87205 Query 94370 CCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGG 94429 ||| || ||| | || || || | || | ||||| | |||| | || Sbjct 87206 ACGAGTGCTGGGGAGAGGAGTTCGAGGAGCTCTACACCAAATACGAGAAGGAGGGGAGGG 87265 Query 94430 CCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAGA 94489 || | || || | ||| | |||||||| | || | || ||| || | Sbjct 87266 TCAAGCGAGTGGTGAAGGCTCAGCAGCTGTGGTACGCCATTATCGAGTCCCAGACAGAAA 87325 Query 94490 CGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCACC 94549 | ||||| || ||||| ||| ||| ||| | |||| ||| |||||||||| ||| Sbjct 87326 CCGGTACACCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACC 87385 Query 94550 TCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACG 94609 | || ||||| || || || ||||| || || || || || || ||| | Sbjct 87386 TGGGCACCATCAAATGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGAGGATG 87445 Query 94610 AGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTACA 94669 || | || || ||||| |||| ||||||| || || || | || ||| | ||| Sbjct 87446 AGGTAGCGGTCTGTAATCTGGCCTCCATC--GCTCTCAACAT--GT-----ATGTC-ACA 87495 Query 94670 CGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGGATGGTCTTGA 94729 | | || | | || || | | |||| | | | | | | || ||| | Sbjct 87496 CCTGAACGG--ACTTTTGACTTTAAAAAGCTGGCGTATGTGACCAAAGTAATCGTCAAAA 87553 Query 94730 ACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTCAAACC 94789 ||||||||| | | || |||| |||| ||| || || || || || ||||| || ||| Sbjct 87554 ACCTGAACAAGATCATAGACATTAACTACTATCCGGTGCCTGAAGCAGAGAAGTCCAACA 87613 Query 94790 TGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGATGATGC 94849 | || |||| || || ||||| || |||||||| || || || | | |||||| Sbjct 87614 AGCGCCACAGGCCAATAGGAATCGGTGTGCAGGGTTTGGCTGATGCCTTCATCCTGATGC 87673 Query 94850 GTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAAAGCATTT 94909 || |||| || || ||| || | |||| | || || || | ||| | Sbjct 87674 GTTACCCCTTTGAAAGTGCCGAGGCTCAGCTGCTGAACACCCAGATCTTTGAGACCATCT 87733 Query 94910 ATTACGGGGCCAT-GAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCACACGAA 94968 | |||| ||| | || | | | | | | |||| | || ||| || |||| Sbjct 87734 ACTACGCCGCCCTGGAGGCGAGCTG-CGAGCTGGC---TGCCGAGCTCGGCCCCTACGAG 87789 Query 94969 TCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAG 95028 | | || || || ||| | | ||||| | |||| |||| | |||| || | Sbjct 87790 ACATACCAAGGCTCCCCCGTCAGCAAAGGCATCCTCCAGTACGACATGTGGGAGAAGACG 87849 Query 95029 CCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATG-TTATCAAACACGGTGTGAA 95087 ||| | | |||| |||| |||||||| | || | | ||||||||| || | Sbjct 87850 CCCACTGACCTGTGGGACT-GGAAGCTCCTGAAGGAGAAGATCGCCAAACACGGAGTCAG 87908 Query 95088 AAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAA 95147 ||| ||||| ||||||| ||||||||||||||||| || |||||||| |||||||| Sbjct 87909 GAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAA 87968 Query 95148 CGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATT 95207 |||||| |||| ||| |||| |||| | |||| | | |||| ||| | || || || Sbjct 87969 CGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTCTGGAGAGTT 88028 Query 95208 CC 95209 || Sbjct 88029 CC 88030 Score = 84.2 bits (92), Expect = 2e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 93331 GTCATGTTCGACAAGATCACTACCAGGGTGCGCAAACTTTGCGAGGGTCTGGACTCTGAC 93390 |||||||||||||| ||||| | | | | || |||||| | || ||| |||||||| Sbjct 86164 GTCATGTTCGACAAAATCACCTCTCGCATCCAGAAGCTTTGCTACGGGCTGAACTCTGAC 86223 Query 93391 TTCGTGGATCCCGTCGAGGTCACCATGAGAGTGAATCAGGGAATATATGCCGGGGTCACA 93450 || ||||| || | | || |||| |||| |||| ||||| | || ||| ||||| Sbjct 86224 TTTGTGGACCCGGCCCAGATCACGATGAAGGTGATCCAGGGTTTGTACAGCGGAGTCACC 86283 Query 93451 ACTGTCGAGCTCGATCTTCTGGCCGCGGAGA 93481 || || ||||| || |||||||| |||| Sbjct 86284 ACAGTGGAGCTGGACACGCTGGCCGCAGAGA 86314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494699651175680