Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2387 168 7e-37 seq14 118 1e-21 seq1563 87.8 2e-12 >seq2387 Length=643009 Score = 168 bits (186), Expect = 7e-37 Identities = 582/898 (65%), Gaps = 25/898 (3%) Strand=Plus/Minus Query 153597 GCAATAGACGCCAGATTACAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCG 153656 || || || |||||||||||||| || ||| || || | |||| | ||||| || Sbjct 87476 GCGATGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCT 87417 Query 153657 GCGCAGAGGTTGCTGCATTTTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCAC 153716 | |||||||||||||||||| ||| ||||| || ||||| ||||| || | ||||| Sbjct 87416 GTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAG 87357 Query 153717 GCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTA 153776 ||||||||| | |||||||| ||| ||||| || || | |||| || | || Sbjct 87356 GCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAAT-GGCGTA 87298 Query 153777 -TGCAGGTCCTGCGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGCTCTCGTATCGCTC 153832 ||| | ||| || || ||| |||| || | ||||| |||||||| Sbjct 87297 CCACAGCTGCTGAGCCTTCACCACTCGCT--TGA-CCCTCCCCTCCTTCTCGTATTTGGT 87241 Query 153833 GTACAGTCGCTCAAACTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACA 153892 ||| || ||| ||||| || || |||| ||| | || ||||| |||| | |||||| Sbjct 87240 GTAGAGCTCCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACA 87181 Query 153893 CATCAGCGACCACATATCGTCGGCGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAG 153952 |||||| ||||| | || | | || | |||||||| || || | ||| || Sbjct 87180 CATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAG 87121 Query 153953 CGCGTACATGAGGTCGC--GCGCCTTGCAATCCTCCGCGCCCATGTTGCGTTTCAGATTG 154010 ||||| | || || | || | |||| |||||| || |||| ||||| | Sbjct 87120 GGCGTAGAAAAGATCTCTGGCTCTTTGC--TCCTCCTTCCCTGTGTTCTTCTTCAGCTCC 87063 Query 154011 AGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACC---TTTA 154067 || | | | | ||| |||||| || || | ||| | ||| | ||| || | | Sbjct 87062 AGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTC 87003 Query 154068 CGCTTTCCGCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCC 154127 || || ||||| ||||||| || || | |||||| | || | || |||||| || Sbjct 87002 TTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACC 86943 Query 154128 AGGCCGCTTGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGC 154187 || ||| | | |||| ||||| || | ||| || || | |||||| Sbjct 86942 AGCCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCC-----CGTCGATCTGATGC 86888 Query 154188 ACGTTA-----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCG 154242 | | | ||||| || || ||| | | || || ||| ||||| | ||||| Sbjct 86887 AGCTGACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCG 86828 Query 154243 TCCTGTAGATGCCGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTT 154302 | || ||||| |||||||| ||||| | | |||||| ||| || ||| | Sbjct 86827 TGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCT 86768 Query 154303 GCGGAATGCGCGTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGC 154362 | || || ||||| || ||||| || ||| ||||| || ||| || | Sbjct 86767 GTGGCCTGTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAACCACTTCTCTG 86708 Query 154363 TCATCATGCGGTACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGA 154422 | || | ||| || |||||||| | |||||||| | ||| ||||||| || | Sbjct 86707 AGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCCA 86648 Query 154423 CGCGCATGAGCATGTGCTGCGGACGTTCGGCGACTCTATTGTCAATCTTCAAGAGATA 154480 | | ||| ||||||||||| || || ||||| ||| |||||| |||||||| || || Sbjct 86647 CTCTCATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGTTGATCTTCAACAGGTA 86590 >seq14 Length=1339370 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || ||| | || | ||| | | | |||||||| || ||||||||||| Sbjct 521488 GCCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 521547 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||||| ||| || || ||||| || | | |||| || | ||| ||||||||||| Sbjct 521548 CAAGGTACGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAGG 521607 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || |||||||| || ||| || || | | ||| | ||||||| | | ||| || Sbjct 521608 GATTCCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCGAC 521667 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||| | || | || ||||||||||| || || ||||| |||||||| Sbjct 521668 CTCCAAAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 521715 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || |||| || ||| | || | ||| | | | |||||||| || ||||||||||| Sbjct 521033 CCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 521092 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| |||||||| ||||| ||||| Sbjct 521093 AGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGG 521152 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || ||| || ||| | | || | ||||||| | | ||| ||| Sbjct 521153 ATTCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCGACC 521212 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || |||||||| || || || || ||||||||| || Sbjct 521213 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 521263 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| |||| || ||| | || | ||| | | | |||||||| || |||||||||||| Sbjct 521260 GCCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 521319 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || ||| || || ||||| || | | |||| || | ||| ||||| ||||| Sbjct 521320 GAGGGTGCGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGG 521379 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 || ||||| ||||| ||| || || | | || | |||||| | | ||| || Sbjct 521380 GATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAAC 521439 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 ||| | || | || || |||||||| || || || || ||||||||| || Sbjct 521440 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGCCT 521491 >seq1563 Length=18910200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || | || ||||| || | ||| | | | |||||||| || ||||||||||| Sbjct 5357142 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 5357201 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || |||| | |||| || | ||| ||||| || || Sbjct 5357202 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 5357261 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| || ||| | | || | ||| ||| | | ||| ||| Sbjct 5357262 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTCTCAATGGTATCGCTGGGCTCAACC 5357321 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 || | || | || || ||||| || ||||| ||||| ||||||||| Sbjct 5357322 TCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATG 5357369 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 ||||| | || ||||| || | ||| | | | |||||||| || ||||||||||| Sbjct 5351047 CCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 5351106 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || || || || || | | |||| || | ||| ||||| || || Sbjct 5351107 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGA 5351166 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | |||||| | | ||| ||| Sbjct 5351167 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCAACC 5351226 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 || | || | || || ||||| || || || ||||| ||||||||| || Sbjct 5351227 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCATGTCT 5351277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496238777909760