Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1563 89.7 4e-13 seq14 84.2 2e-11 >seq1563 Length=18910200 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| || ||| | | | ||||| | || Sbjct 5356709 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 5356768 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| || | ||||| | ||| ||||| ||||| ||||||||||| || || Sbjct 5356769 CTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 5356828 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || |||||||| || || || | ||| ||||| || ||||| Sbjct 5356829 GGCCTTGACATTCTCAATGGTATCGCTTGGCTCGACCTCCAGGGTGATGGTCTTGCCTGT 5356888 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| ||||| || ||||| Sbjct 5356889 GAGGGTTTTCACAAAGATCTGCAT 5356912 Score = 82.4 bits (90), Expect = 5e-11 Identities = 141/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| || ||| | | | ||||| | || Sbjct 5355797 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 5355856 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 |||||||| | |||| | ||| ||||| ||||| ||||||||||| || || Sbjct 5355857 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 5355916 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | || ||| | || || || ||||| || || || | ||| ||||| || || || Sbjct 5355917 GGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 5355976 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 || ||||| ||||| || |||||| Sbjct 5355977 GAGGGTTTTGACAAAGATCTGCATA 5356001 Score = 82.4 bits (90), Expect = 5e-11 Identities = 143/208 (69%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032 ||| ||||| || || || || |||||||| || ||| | | | ||||| | || Sbjct 5357165 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 5357224 Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092 ||||| || | |||| | ||| ||||| ||||| ||||||||||| || || Sbjct 5357225 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 5357284 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 | ||| || | || || |||||||| || || || | ||| ||||| || || || Sbjct 5357285 GGCTTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 5357344 Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180 || ||||| ||||| || ||||| ||| Sbjct 5357345 GAGGGTTTTCACAAAGATCTGCATGTTT 5357372 >seq14 Length=1339370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/209 (69%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030 ||| ||||| || || || || |||||||| || || || || ||||||| | Sbjct 521512 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA--GACAAGGTACGGCCGTCTTCCAGC 521569 Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090 ||||||||||| | |||| | ||| ||||| || |||||||| || || || Sbjct 521570 TGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTATCCTGGATC 521629 Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150 ||| || ||| |||| || || ||||| || || || || || ||||| ||||| Sbjct 521630 TTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCGACCTCCAAAGTGATGGTCTTACCA 521689 Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATT 15179 ||||| || || ||||| || ||||| || Sbjct 521690 GTCAGGGTCTTCACAAAGATCTGCATCTT 521718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357375413437280