Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq1563 89.7 4e-13
seq14 84.2 2e-11
>seq1563
Length=18910200
Score = 89.7 bits (98), Expect = 4e-13
Identities = 142/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| ||||| || || || || |||||||| || ||| | | | ||||| | ||
Sbjct 5356709 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 5356768
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||||| || | ||||| | ||| ||||| ||||| ||||||||||| || ||
Sbjct 5356769 CTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 5356828
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| || ||| | || || |||||||| || || || | ||| ||||| || |||||
Sbjct 5356829 GGCCTTGACATTCTCAATGGTATCGCTTGGCTCGACCTCCAGGGTGATGGTCTTGCCTGT 5356888
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| ||||| || |||||
Sbjct 5356889 GAGGGTTTTCACAAAGATCTGCAT 5356912
Score = 82.4 bits (90), Expect = 5e-11
Identities = 141/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| ||||| || || || || |||||||| || ||| | | | ||||| | ||
Sbjct 5355797 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 5355856
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
|||||||| | |||| | ||| ||||| ||||| ||||||||||| || ||
Sbjct 5355857 CTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 5355916
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| || ||| | || || || ||||| || || || | ||| ||||| || || ||
Sbjct 5355917 GGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGTCTTGCCAGT 5355976
Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177
|| ||||| ||||| || ||||||
Sbjct 5355977 GAGGGTTTTGACAAAGATCTGCATA 5356001
Score = 82.4 bits (90), Expect = 5e-11
Identities = 143/208 (69%), Gaps = 0/208 (0%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTG 15032
||| ||||| || || || || |||||||| || ||| | | | ||||| | ||
Sbjct 5357165 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTG 5357224
Query 15033 TTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTT 15092
||||| || | |||| | ||| ||||| ||||| ||||||||||| || ||
Sbjct 5357225 CTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGGATCTT 5357284
Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| ||| || | || || |||||||| || || || | ||| ||||| || || ||
Sbjct 5357285 GGCTTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 5357344
Query 15153 CAGAGTTTTTACAAAAATTTGCATATTT 15180
|| ||||| ||||| || ||||| |||
Sbjct 5357345 GAGGGTTTTCACAAAGATCTGCATGTTT 5357372
>seq14
Length=1339370
Score = 84.2 bits (92), Expect = 2e-11
Identities = 145/209 (69%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 14973 ATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCTTCTAAT 15030
||| ||||| || || || || |||||||| || || || || ||||||| |
Sbjct 521512 ATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA--GACAAGGTACGGCCGTCTTCCAGC 521569
Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090
||||||||||| | |||| | ||| ||||| || |||||||| || || ||
Sbjct 521570 TGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTATCCTGGATC 521629
Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150
||| || ||| |||| || || ||||| || || || || || ||||| |||||
Sbjct 521630 TTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCGACCTCCAAAGTGATGGTCTTACCA 521689
Query 15151 GTCAGAGTTTTTACAAAAATTTGCATATT 15179
||||| || || ||||| || ||||| ||
Sbjct 521690 GTCAGGGTCTTCACAAAGATCTGCATCTT 521718
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357375413437280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |