Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2387 127 2e-24 seq1563 82.4 7e-11 >seq2387 Length=643009 Score = 127 bits (140), Expect = 2e-24 Identities = 451/693 (65%), Gaps = 30/693 (4%) Strand=Plus/Minus Query 146109 GTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCTGCGCCGTCGTAGCGGT 146168 |||||||||| | | ||||| ||||||||||| || || ||||| || || | || || Sbjct 87996 GTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGT 87937 Query 146169 AGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTTGAATCTTTTCCC---G 146225 ||||| |||| ||||| ||| || || |||||| | ||||| ||| | Sbjct 87936 GGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAG 87877 Query 146226 TAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGTAGTTGTCGTAATGCAT 146285 || || ||| | ||||| | || ||||| | | | ||||||| || | Sbjct 87876 GAGCTT---CCAGTCCCACA---GGTCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAG 87823 Query 146286 AGTGCC---GCGGAACAGGGGGCTATTCTCGTACGATTCATAAGGACCGTCGATCTTGGC 146342 |||| || || ||| || | ||| | || || || ||| | || ||| Sbjct 87822 GATGCCTTTGCTGACGGGGGAGCCTTG---GTATGTCTCGTAGGGGCCG---AGCTCGGC 87769 Query 146343 ---CAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCCGCGATCATGTAGTT 146399 ||| |||||||| || ||||| || | |||| |||||||| |||| | ||| Sbjct 87768 AGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTT 87709 Query 146400 GACGCTCCTG-GCCTCCTCGCTGTCGTAGGGGATATCG-AGAAGCACAAAGGCGTCGGCG 146457 | || ||| ||||| | || || ||||| || || | || | ||||| || || Sbjct 87708 CA-GCAGCTGAGCCTCGGCACTTTCAAAGGGG-TAACGCATCAGGATGAAGGCATCAGCC 87651 Query 146458 AGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTTCGCAGCGCCCGCA 146517 | |||||| | |||| || | || | ||| |||||| ||| | || | | Sbjct 87650 AAACCCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGC 87591 Query 146518 GTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGACAATTTTCGTCAAA 146577 ||||||| ||| |||| ||||||||||| || || |||| | ||| |||| | Sbjct 87590 ACCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACA 87531 Query 146578 CGATTCAGCAGGACATAGTCAAATGTTTTAGTTTTAACGT-TGACGCACTTGTTGACGGC 146636 |||| | ||||||| || || | || |||| || |||||| || Sbjct 87530 TACGCCAGCTTTTTAAAGTCAAAAGTCCG----TTCAGGTGTGACATACATGTTGAGAGC 87475 Query 146637 GATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCAATACTGCACAATCTCGGC 146696 ||| ||||||| ||||| || || ||| |||| | | || | || || || | Sbjct 87474 GATGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGT 87415 Query 146697 GCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTACTAAACTTGTTGCAGGG 146756 ||||||||||||||| |||||| |||||| || | ||||| || | ||||||||| Sbjct 87414 GCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGC 87355 Query 146757 GTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 ||| ||||| |||||||| ||| |||||||| Sbjct 87354 GTCTTTGTACAGCATGTATGGTGTACCGGTTTC 87322 >seq1563 Length=18910200 Score = 82.4 bits (90), Expect = 7e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 146680 TACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGTTA 146739 |||| || ||||| | ||| || |||||| | |||||| |||||| ||| | ||||| Sbjct 8605804 TACTCTACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTG 8605863 Query 146740 CTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || | |||| |||| |||||||||||||||||| ||| || ||||| Sbjct 8605864 CTCTTCCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTC 8605913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475478166161920