Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2387 159 3e-34 >seq2387 Length=643009 Score = 159 bits (176), Expect = 3e-34 Identities = 880/1394 (63%), Gaps = 24/1394 (2%) Strand=Plus/Plus Query 122898 AAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGC 122957 || || ||||| || ||| || ||||| ||| | || ||| | ||| | ||| || Sbjct 86611 AAAGTGGCCGAGCGGCCTCAGCACATGCTAATGAGAGTGGCTGTCGGCATCCACAGAACA 86670 Query 122958 GACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCG 123017 || ||||| || | ||| || ||| | || | || | || | ||||| ||||| Sbjct 86671 GATATCGAGGCGGCCATCGAGACCTACAACCTGCTCTCAGAGAAGTGGTTCACCCACGCC 86730 Query 123018 AGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTC 123077 ||| || | ||| || || || || ||| ||| |||| || || ||||| Sbjct 86731 TCTCCTACACTCTTCAATGCTGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTC 86790 Query 123078 ACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATT 123137 || || || ||||||||| || || ||||| || || | ||||| | || Sbjct 86791 GCCATGAAGGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATC 86850 Query 123138 TCCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAG-GCCGCGGAAGCCG 123196 ||||||| | ||| || || |||||| || | | | ||| | || ||| || Sbjct 86851 TCCAAATCGGCCGGAGGAATCGGCGTGGCGGTCAGCTGCATCAGATCGACGGGGA-GCTA 86909 Query 123197 CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAA 123256 ||| | ||| | || | || |||||| | |||||||| |||||||||| || Sbjct 86910 CATTGCCGGAACCAATGGCAATTCCAACGGGCTGGTCCCCATGCTGAGAGTTTACAACAA 86969 Query 123257 CGCCGTGCGGCACGTCGACCAGGGCGGCAAACGCAAA---GGCGCGATGGCGATCTATCT 123313 | | | || ||||||||||||| ||||| | | || || | || || || || Sbjct 86970 CACGGCCCGTTACGTCGACCAGGGTGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCT 87029 Query 123314 AGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGA 123373 || || |||||| |||| || | ||| || | | | || |||| ||| ||| Sbjct 87030 GGAGCCATGGCACTTTGACGTTTTCGACTTCCTGGAGCTGAAGAAGAACACAGGGAAGGA 87089 Query 123374 AGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACG 123433 || | | |||| | ||| | || ||||| | ||| | ||||| ||||| ||| | Sbjct 87090 GGAGCAAAGAGCCAGAGATCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAG 87149 Query 123434 CGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCG-GTGTCCCGGCTTGAGCG 123492 || | | || | ||||| || |||||||| || || ||| ||||| || || Sbjct 87150 GGTGGAGAGCAACCAAGACTGGTCCCTGATGTGTCC-GAACGAGTGCCCCGGGCTGGACG 87208 Query 123493 ACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAA--CA 123550 | | || | |||| || ||| | ||| | |||||||| || || | || Sbjct 87209 AGTGCTGGGGAGAGGAGTTCGAGGAGCTCTACACCAAATACGAGAAGGAGGGGAGGGTCA 87268 Query 123551 GGTTAGTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAAC 123610 | ||| ||| ||| | | ||| | |||||||| | || ||||| Sbjct 87269 AGCGAGT--GGTGAAGGCTCAGCAGCTGTGGTACGCCATTATCGAGTCCCAGACAGAAAC 87326 Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTT 123670 ||| || || |||||||| ||||||||||||||||||||||| | ||| ||| ||| | Sbjct 87327 CGGTACACCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCT 87386 Query 123671 GGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCA 123730 ||| || || ||||| || || || ||| | ||||| | ||||||| | | ||| | Sbjct 87387 GGGCACCATCAAATGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGAGGATGA 87446 Query 123731 AGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGAA----AACGGCG 123786 || || || |||||| |||| || || | || | ||| | ||||| Sbjct 87447 GGTAGCGGTCTGTAATCTGGCCTCCATCGCTCTCAACATGTATGTCACACCTGAACGG-A 87505 Query 123787 CTTTTAATTTCCAAACGCT--CAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAA 123844 ||||| | || ||| ||| | | | | || ||| | || || || ||||||| Sbjct 87506 CTTTTGACTTTAAAAAGCTGGCGTATG--TGACCAAAGTAATCGTCAAAAACCTGAACAA 87563 Query 123845 AATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCGCGTTTGTCTAATTTGAAACACAG 123904 || || || |||| | ||||| || ||||| ||| || | ||||| Sbjct 87564 GATCATAGACATTAACTACTATCCGGTGCCTGAAGCAGAGAAGTCCAACAAGCGCCACAG 87623 Query 123905 ACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTA 123964 || | ||| | || | || || ||||| || || || | || |||| || | Sbjct 87624 GCCAATAGGAATCGGTGTGCAGGGTTTGGCTGATGCCTTCATCCTGATGCGTTACCCCTT 87683 Query 123965 CGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGC 124024 ||||| | ||| || || |||| || || || || || || || || |||| ||| Sbjct 87684 TGAAAGTGCCGAGGCTCAGCTGCTGAACACCCAGATCTTTGAGACCATCTACTACGCCGC 87743 Query 124025 TTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAG 124084 |||||||||||||||| || || | |||| | ||||| | ||| ||| Sbjct 87744 CCTGGAGGCGAGCTGCGAGCTGGCTGCCGAGCTCGGCCCCTACGAGACATACCAAGGCTC 87803 Query 124085 CCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTG 124144 ||| | ||| ||| || | ||||||||||||||| | || || || | |||| Sbjct 87804 CCCCGTCAGCAAAGGCATCCTCCAGTACGACATGTGGGAGAAGACGCCCACTGACCTGTG 87863 Query 124145 GGACTGGAGCGTTTTAAAACAACGCATATCG--ACGCACGGTTTGCGTAACTCGCTGTTG 124202 |||||||| | | || | | | |||| | ||||| | | ||| ||| || Sbjct 87864 GGACTGGAAGCTCCTGAAGGA--GAAGATCGCCAAACACGGAGTCAGGAACAGCCTGCTG 87921 Query 124203 GTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAG 124262 |||| ||||| ||||| |||| || || || | || |||||||| ||| ||||| Sbjct 87922 CTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAG 87981 Query 124263 CCGTTCACTAACAA 124276 | | ||| | ||| Sbjct 87982 GCCTACACCAGCAA 87995 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451981684647680