Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq16 125 1e-23 seq2 125 1e-23 >seq16 Length=2433014 Score = 125 bits (138), Expect = 1e-23 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 8936 GCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCC 8995 ||||| || | ||||| || || ||| || |||||||||||||| ||||||||| || Sbjct 1109403 GCGGTATTGATGATGTTGAAGCCCACGCTGCCTCCGAAGGTGCTGGGCTTCCAGTACTCC 1109462 Query 8996 GGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATG 9055 |||||||||||| ||| |||| | ||||| | ||| || || ||||||| ||| | Sbjct 1109463 GGGGAGCAGATGGGGTTTCCCATTAAGCCTTTGAGGGAGAAAGGGGCCCCCATCTCCACC 1109522 Query 9056 ATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGT 9115 ||| |||| ||||||||||| ||| | ||||| || || | | ||| | |||||| Sbjct 1109523 ATGGTCTCTCCGAAGATGGCGTTGGGTCTGGGTTTCTCCACCAGCAGGCCTGGGTAGAGC 1109582 Query 9116 TCGACAGCCTCGAC 9129 || || || || || Sbjct 1109583 TCCACGGCATCCAC 1109596 Score = 113 bits (124), Expect = 7e-20 Identities = 201/290 (69%), Gaps = 4/290 (1%) Strand=Plus/Plus Query 9432 CCGACCGGCAATCTGTCTAGTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAG 9491 ||| || |||||||| | || || || || || | | | || || |||| | | | Sbjct 1110545 CCGTCCAGCAATCTGCTTGGTAAAGGACTCCACGAGGTTGTTGATGCCATGCTCGGTCAC 1110604 Query 9492 GATGGAATTGTTGTAAACGAAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATC 9551 | || ||||| | || || |||| ||| | || | | || | ||| | ||| Sbjct 1110605 TACAGAGGTGTTGAAGACAAACTGTTTGTAGCTGTAATCTGTATCCTCAATGTGGAAACT 1110664 Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 |||||||| ||| | |||||| |||| ||||| |||||||| | || || |||||||| Sbjct 1110665 ATCAGGCATCAGCGGGTGCCAGTGGTACAGGGTGTTGAACTCTGAGGCAATGCGGTTCTG 1110724 Query 9612 GTACT-GAAAGGC-GGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTAC 9669 ||||| |||| || ||| ||| || | ||| |||||||| | |||| ||||||||| Sbjct 1110725 GTACTGGAAACGCTGGT--TGAAGAGCAGCTCGGGGTCAAACTTGAGCTTGAAGTGGTAG 1110782 Query 9670 CCGCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCC 9719 ||||| || ||||| || || | |||| ||| || ||||| || || Sbjct 1110783 CCGCTCAGGTGCTGCACGTAGTCCTCAATTACAATCTTTATGGTCTCACC 1110832 Score = 87.8 bits (96), Expect = 3e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 9726 GATTAGACGAGTGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAG 9785 ||| || || ||||| || || | || ||| |||| || ||||| | | || || Sbjct 1111328 GATGAGCCGTGTGGTCTGGAAGAGTCTTTCATCATCCCAGTCGGGGTGCACCTCCTTCAG 1111387 Query 9786 AACATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGG 9845 ||||| || |||| |||||| || | |||||| ||||||||||||||||| | ||| || Sbjct 1111388 CACATCACACACCCGGTTGTGCTCCCGCAGCCAAATGGTGGCGTACATCATCAGACCAGG 1111447 Query 9846 CACTAAACCAAACACTTCATTCCCCACTGCAAAGCG 9881 || | ||||| | || | ||||| |||||||| Sbjct 1111448 GACCAGGCCAAAGGCCTCGTGGCCCACAGCAAAGCG 1111483 >seq2 Length=6798370 Score = 125 bits (138), Expect = 1e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 8938 GGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGG 8997 |||||| ||||||| || || || || || ||||||||||| ||||||||| | || Sbjct 2262003 GGTTTTGACGATGTTAAAGCCAGTCTCTCCCCCAAAGGTGCTGGGCTTCCAGTACTCAGG 2262062 Query 8998 GGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGAT 9057 |||||||||| ||| ||| ||| ||||||| ||| || ||||| |||| ||| | || Sbjct 2262063 GGAGCAGATGGGGTTTCCCAGGAGGCCTTTCAGGGAGAATGGAGCACCCATCTCCACCAT 2262122 Query 9058 GCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTA 9111 ||||||||||| ||| |||| ||||| | ||| || | | || |||| ||| Sbjct 2262123 ACTCTCACCGAATATGCCACCAGGACGTGTTTTCTCCAGCAGGACTCCAGGGTA 2262176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723693550547200