Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 223 4e-53
seq1563 105 8e-18
seq963 96.9 4e-15
seq375 96.9 4e-15
seq52 96.9 4e-15
>seq2387
Length=643009
Score = 223 bits (246), Expect = 4e-53
Identities = 839/1301 (64%), Gaps = 34/1301 (3%)
Strand=Plus/Minus
Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962
||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||||
Sbjct 88001 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 87942
Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022
|| |||||||| || |||| || |||||||| | || || || |||
Sbjct 87941 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCC 87882
Query 116023 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGA 116080
|| ||| | |||||| | | | || | | | | ||||||||| || ||||||
Sbjct 87881 TTCAGGAGCTTCCAGTCCCACAGGTCAG--TGGGCGTCTTCTCCCACATGTCGTACTGGA 87824
Query 116081 GGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 116138
|||| |||| | |||| || || || | ||||||| || ||||| | | ||
Sbjct 87823 GGATGCCTTTGCTGACG--GGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAGC 87766
Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198
|| ||| |||||||||| ||||| |||| || || |||||||| || | | ||||
Sbjct 87765 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAG 87706
Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258
|| |||||| | ||||| | | ||| || || || |||| || | |||
Sbjct 87705 CAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACC 87646
Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGG 116318
|| ||||||| || ||||| | || | | | || ||||| || ||| ||
Sbjct 87645 CTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGG 87586
Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378
||| | || | || || | | | || || |||||| || || || || | |
Sbjct 87585 ATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACATACGC 87526
Query 116379 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGAT 116435
||||||| | |||||| | || |||| |||||||| | || |||||
Sbjct 87525 CAGCTTTTTAAAGTCAAAAGTCCG------TTCAGGTGTGACATACATGTTGAGAGCGAT 87472
Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495
|| ||||||||||| || | |||||||| ||||| || | ||||| || ||
Sbjct 87471 GGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCA 87412
Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555
| || | || |||||||||| ||||| || || ||| |||| || || ||
Sbjct 87411 GAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 87352
Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614
||||| ||||| ||||| || || || || || ||||||| || ||| || | ||| |
Sbjct 87351 TTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAG 87292
Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674
| | | | || || | || ||| | | |||||||| |||||| || ||||||||
Sbjct 87291 CTGCTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCT 87233
Query 116675 CCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733
|||| ||||| || ||| |||| ||| ||||| || || | ||||| | ||
Sbjct 87232 CCTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGG 87174
Query 116734 GACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790
||||| ||| | |||| |||| ||||||||| | ||| |||||||| || ||
Sbjct 87173 GACCAGTCTTGGTTGCTCTCC---ACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCG 87117
Query 116791 GAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849
|||| ||||| | | | ||| || | |||| || || || ||||| ||
Sbjct 87116 TAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTCTTCTTCAGCTCCAGGAA 87058
Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGAC 116905
||| | | || |||||| || |||||||||| |||| | || || |
Sbjct 87057 GTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTT 86998
Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965
| ||| |||||| || || | ||||| ||| | || | ||||| || | | |
Sbjct 86997 G-CCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCC 86939
Query 116966 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGT 117025
| | || | |||||| || || ||| | | | ||||| | ||
Sbjct 86938 CGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCG 86879
Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085
|| || || || || ||| | || ||||| | ||||||| | | || || | || |
Sbjct 86878 CCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAA 86819
Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145
| || ||||| ||| |||| | |||| ||||||||||| |||| ||||||||
Sbjct 86818 TGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT 86759
Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186
|| ||||| |||||||| || || | |||||| |||||
Sbjct 86758 TGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAAC 86718
>seq1563
Length=18910200
Score = 105 bits (116), Expect = 8e-18
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961
||||||||| | ||||||| ||||||| |||||||||| |||| ||| ||||| |||||
Sbjct 8604819 ATAGATGTTACTGGTGTATGCCTCAAAGGACTCATTGTTGCCCAGGATCTGGGCAGTGGA 8604878
Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994
||||||||||| || |||| ||| ||||||||
Sbjct 8604879 AGCTGTGGGCATTGGGGCCAAGAGCAGGCTGTT 8604911
>seq963
Length=229635
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 212701 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 212642
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658
||| |||||| |||||| || || |||||||||||||| ||||||||| || || |
Sbjct 212641 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 212582
Query 127659 CAAATAGACGCTC 127671
| | | ||||||
Sbjct 212581 CCACCACACGCTC 212569
>seq375
Length=30079
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 25675 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 25734
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658
||| |||||| |||||| || || |||||||||||||| ||||||||| || || |
Sbjct 25735 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 25794
Query 127659 CAAATAGACGCTC 127671
| | | ||||||
Sbjct 25795 CCACCACACGCTC 25807
>seq52
Length=1057507
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 13946 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 14005
Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658
||| |||||| |||||| || || |||||||||||||| ||||||||| || || |
Sbjct 14006 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 14065
Query 127659 CAAATAGACGCTC 127671
| | | ||||||
Sbjct 14066 CCACCACACGCTC 14078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613477997057280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |