Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2387 223 4e-53 seq1563 105 8e-18 seq963 96.9 4e-15 seq375 96.9 4e-15 seq52 96.9 4e-15 >seq2387 Length=643009 Score = 223 bits (246), Expect = 4e-53 Identities = 839/1301 (64%), Gaps = 34/1301 (3%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 88001 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 87942 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || |||||||| | || || || ||| Sbjct 87941 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCC 87882 Query 116023 TTGAGGGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGA 116080 || ||| | |||||| | | | || | | | | ||||||||| || |||||| Sbjct 87881 TTCAGGAGCTTCCAGTCCCACAGGTCAG--TGGGCGTCTTCTCCCACATGTCGTACTGGA 87824 Query 116081 GGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 116138 |||| |||| | |||| || || || | ||||||| || ||||| | | || Sbjct 87823 GGATGCCTTTGCTGACG--GGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAGC 87766 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 || ||| |||||||||| ||||| |||| || || |||||||| || | | |||| Sbjct 87765 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAG 87706 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACC 116258 || |||||| | ||||| | | ||| || || || |||| || | ||| Sbjct 87705 CAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACC 87646 Query 116259 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGG 116318 || ||||||| || ||||| | || | | | || ||||| || ||| || Sbjct 87645 CTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGG 87586 Query 116319 ATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATG 116378 ||| | || | || || | | | || || |||||| || || || || | | Sbjct 87585 ATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACATACGC 87526 Query 116379 AAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGAT 116435 ||||||| | |||||| | || |||| |||||||| | || ||||| Sbjct 87525 CAGCTTTTTAAAGTCAAAAGTCCG------TTCAGGTGTGACATACATGTTGAGAGCGAT 87472 Query 116436 TGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACA 116495 || ||||||||||| || | |||||||| ||||| || | ||||| || || Sbjct 87471 GGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCA 87412 Query 116496 CAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATC 116555 | || | || |||||||||| ||||| || || ||| |||| || || || Sbjct 87411 GAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTC 87352 Query 116556 CTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA- 116614 ||||| ||||| ||||| || || || || || ||||||| || ||| || | ||| | Sbjct 87351 TTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAG 87292 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 | | | | || || | || ||| | | |||||||| |||||| || |||||||| Sbjct 87291 CTGCTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGAGCT 87233 Query 116675 CCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGA 116733 |||| ||||| || ||| |||| ||| ||||| || || | ||||| | || Sbjct 87232 CCTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGG 87174 Query 116734 GACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCC 116790 ||||| ||| | |||| |||| ||||||||| | ||| |||||||| || || Sbjct 87173 GACCAGTCTTGGTTGCTCTCC---ACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCG 87117 Query 116791 GAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAA 116849 |||| ||||| | | | ||| || | |||| || || || ||||| || Sbjct 87116 TAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTCTTCTTCAGCTCCAGGAA 87058 Query 116850 GTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTGCGAC 116905 ||| | | || |||||| || |||||||||| |||| | || || | Sbjct 87057 GTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTT 86998 Query 116906 GACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATAC 116965 | ||| |||||| || || | ||||| ||| | || | ||||| || | | | Sbjct 86997 G-CCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCC 86939 Query 116966 CATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGT 117025 | | || | |||||| || || ||| | | | ||||| | || Sbjct 86938 CGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGACCG 86879 Query 117026 GCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGA 117085 || || || || || ||| | || ||||| | ||||||| | | || || | || | Sbjct 86878 CCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAA 86819 Query 117086 TCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTG 117145 | || ||||| ||| |||| | |||| ||||||||||| |||| |||||||| Sbjct 86818 TGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGT 86759 Query 117146 GTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAAC 117186 || ||||| |||||||| || || | |||||| ||||| Sbjct 86758 TGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAAC 86718 >seq1563 Length=18910200 Score = 105 bits (116), Expect = 8e-18 Identities = 79/93 (85%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 ||||||||| | ||||||| ||||||| |||||||||| |||| ||| ||||| ||||| Sbjct 8604819 ATAGATGTTACTGGTGTATGCCTCAAAGGACTCATTGTTGCCCAGGATCTGGGCAGTGGA 8604878 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 ||||||||||| || |||| ||| |||||||| Sbjct 8604879 AGCTGTGGGCATTGGGGCCAAGAGCAGGCTGTT 8604911 >seq963 Length=229635 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 212701 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 212642 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| |||||| || || |||||||||||||| ||||||||| || || | Sbjct 212641 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 212582 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 212581 CCACCACACGCTC 212569 >seq375 Length=30079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 25675 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 25734 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| |||||| || || |||||||||||||| ||||||||| || || | Sbjct 25735 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 25794 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 25795 CCACCACACGCTC 25807 >seq52 Length=1057507 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 13946 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 14005 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| |||||| || || |||||||||||||| ||||||||| || || | Sbjct 14006 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 14065 Query 127659 CAAATAGACGCTC 127671 | | | |||||| Sbjct 14066 CCACCACACGCTC 14078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613477997057280