Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 192 9e-44
seq39 95.1 2e-14
>seq2387
Length=643009
Score = 192 bits (212), Expect = 9e-44
Identities = 593/893 (66%), Gaps = 32/893 (4%)
Strand=Plus/Minus
Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943
|| ||||| || ||||| | ||| | ||| || | |||| | ||||||||| |
Sbjct 87428 TCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTC 87369
Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCG 205002
|| | ||| |||| ||| ||||||| |||| | || | ||| | || |||| || |||
Sbjct 87368 TTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCG 87309
Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGA 205059
| |||| | ||||| | |||||| ||||| |||| || | |||| |
Sbjct 87308 -ATAATGGCGTACCACAGCTGCTGAGCCTTCACCACTCGCTTGAC---CCTCCCCTCCTT 87253
Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGG 205116
||||||||| ||||| ||| || | || || || | || |||||| |||| ||
Sbjct 87252 CTCGTATTTGGTGTAGAGCTCCTCGAACTCCTCTCCCCAGCACTCGTCCA---GCCCGGG 87196
Query 205117 ACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAG 205176
|| | || ||||||||||| ||||| || | | | |||||||| ||| ||||
Sbjct 87195 GCACTCGTTCGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAA 87136
Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTC--TCCAAG- 205233
|||| |||||||||| |||| || ||||| | ||| || || | || || ||| |
Sbjct 87135 GTCGGGGATCCACAGGGCGTAGAAAAGATCTCTGGCTCT--TTGC-TCCTCCTTCCCTGT 87079
Query 205234 GTTCTTTTTCAAGTCCAGCCAAGCCGCAAT-GTCGGCGTGCCACGGCTCTAACCACACGG 205292
|||||| |||| ||||| ||| || || ||| |||||| ||||| | ||| ||
Sbjct 87078 GTTCTTCTTCAGCTCCAGG-AAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGG 87020
Query 205293 CCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAA 205352
| | || || || |||||||| ||||||||||| || || | | | |||| |||
Sbjct 87019 CGAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAA 86960
Query 205353 CTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG-GCCGAGCCT 205411
||| |||||| || ||||| ||||||| | || || || | | ||| | ||
Sbjct 86959 CTCTCAGCATGGGGACCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCG 86900
Query 205412 TCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCG 205471
|| | || | | | || ||| |||| || || || | | |||| ||| |||||
Sbjct 86899 TC-GATCTGATGCAGCTGACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCG 86841
Query 205472 CACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531
|||| | ||| ||| || |||||| ||||| |||||| || | | ||| ||
Sbjct 86840 CACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 86781
Query 205532 CACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCT 205590
|| | ||||| |||| |||||| || || | |||||| || || ||||||| |
Sbjct 86780 CAGCTGGACAGCTGTGGC-CTGTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGT 86722
Query 205591 GAAGCGCTTCTCGCTCA-AACA-CCTGTAGGTCTCCA-GCACGCTCTCCAGATCGAAGCC 205647
||| | ||||| || | | || |||||||||| | | ||| ||| | ||| |
Sbjct 86721 GAACCACTTCT--CTGAGAGCAGGTTGTAGGTCTCGATGGCCGC-CTCGATATCTGTTCT 86665
Query 205648 GTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTT 205707
||| || || | || | ||||| | | ||| ||||| | ||| ||| | | |||
Sbjct 86664 GTGGATGCCGACAGCCACTCTCATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGTT 86605
Query 205708 CACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760
| ||| | ||| |||| ||||| || || || | |||| |||||| |||
Sbjct 86604 GATCTTCAACAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGG 86552
Score = 165 bits (182), Expect = 1e-35
Identities = 302/435 (69%), Gaps = 8/435 (2%)
Strand=Plus/Minus
Query 204178 CAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTT 204237
||| || || || | |||||| || ||||| || || |||| |||||| | | |||| |
Sbjct 88050 CAGATGAGGATTCACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCT 87991
Query 204238 GGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297
|||| | | |||| | |||||||||||| | ||||| |||||| ||||||||||||
Sbjct 87990 GGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 87931
Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAG-G 204356
|| ||||| |||||| ||| | || |||| ||| || | | |||||| |||
Sbjct 87930 CGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAG-GAGCT 87872
Query 204357 TCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGAC 204416
||||||| || || |||| || ||||||||||| |||| | |||||||| |
Sbjct 87871 TCCAGTCCCACAGGTCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGC 87812
Query 204417 TGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCTTCTGCCAGCTTGCACGAG 204475
|||| ||| ||| | ||| ||| || ||| || ||| | ||||||| |||
Sbjct 87811 TGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGA-GCTCGGCAGCCAGCTCGCAGCTC 87753
Query 204476 GCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTA--ATCTGGCGGCCT 204533
|| ||| |||| ||||| ||||||||||||||||| ||| | | ||| ||||
Sbjct 87752 GCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTG--AGCCT 87695
Query 204534 CCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGA 204593
| | | ||||| | || || || | || | || ||||| |||||||| ||||
Sbjct 87694 CGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGA 87635
Query 204594 TTCCCAACGGTCTGT 204608
|||| | || ||||
Sbjct 87634 TTCCTATTGGCCTGT 87620
Score = 111 bits (122), Expect = 3e-19
Identities = 116/150 (77%), Gaps = 2/150 (1%)
Strand=Plus/Minus
Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976
||| ||||| | ||||||| | |||||||| ||| || ||||| ||||| |||||
Sbjct 88979 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGTT 88920
Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035
||| |||||||| ||||| ||||| ||| || || || || ||||| || | |||||||
Sbjct 88919 CAGGGACTGGCTCTGGTCAATGAA-GGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861
Query 204036 TCTGCGAAATCTCCCACACCGTCTTGAACA 204065
|||| || || |||||||| || ||| |||
Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACA 88831
>seq39
Length=7185878
Score = 95.1 bits (104), Expect = 2e-14
Identities = 82/102 (80%), Gaps = 0/102 (0%)
Strand=Plus/Minus
Query 200190 CAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAATATCACGAAG 200249
|||| |||||||| || || ||||| || ||||||||||||||||| | ||| | ||||
Sbjct 4278302 CAGAGTGGTTCCGAAGCACCTGGACTCTTCAGGATGACCCTTGTAAGAGATACTATGAAG 4278243
Query 200250 TGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291
| ||||| |||| ||| |||| | || |||||||||||||
Sbjct 4278242 TTCTCATGGTCAATCCCATTCTGCTGGTACCTCCAACCAAGG 4278201
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795117350612480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |