Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2387 192 9e-44 seq39 95.1 2e-14 >seq2387 Length=643009 Score = 192 bits (212), Expect = 9e-44 Identities = 593/893 (66%), Gaps = 32/893 (4%) Strand=Plus/Minus Query 204884 TCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGAC 204943 || ||||| || ||||| | ||| | ||| || | |||| | ||||||||| | Sbjct 87428 TCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTC 87369 Query 204944 TTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TCG 205002 || | ||| |||| ||| ||||||| |||| | || | ||| | || |||| || ||| Sbjct 87368 TTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCG 87309 Query 205003 CAGAATGTGGGTCCACAATTCGCGAGCCT---CCACTTGCTTCACGTACATCCCTTGAGA 205059 | |||| | ||||| | |||||| ||||| |||| || | |||| | Sbjct 87308 -ATAATGGCGTACCACAGCTGCTGAGCCTTCACCACTCGCTTGAC---CCTCCCCTCCTT 87253 Query 205060 CTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCCTGG 205116 ||||||||| ||||| ||| || | || || || | || |||||| |||| || Sbjct 87252 CTCGTATTTGGTGTAGAGCTCCTCGAACTCCTCTCCCCAGCACTCGTCCA---GCCCGGG 87196 Query 205117 ACATTTTTTGGGACACATCAGAGACCACATCTGATCGTCTTTCACCCTCTCCATAAACAG 205176 || | || ||||||||||| ||||| || | | | |||||||| ||| |||| Sbjct 87195 GCACTCGTTCGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAA 87136 Query 205177 GTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTC--TCCAAG- 205233 |||| |||||||||| |||| || ||||| | ||| || || | || || ||| | Sbjct 87135 GTCGGGGATCCACAGGGCGTAGAAAAGATCTCTGGCTCT--TTGC-TCCTCCTTCCCTGT 87079 Query 205234 GTTCTTTTTCAAGTCCAGCCAAGCCGCAAT-GTCGGCGTGCCACGGCTCTAACCACACGG 205292 |||||| |||| ||||| ||| || || ||| |||||| ||||| | ||| || Sbjct 87078 GTTCTTCTTCAGCTCCAGG-AAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGG 87020 Query 205293 CCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAA 205352 | | || || || |||||||| ||||||||||| || || | | | |||| ||| Sbjct 87019 CGAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAA 86960 Query 205353 CTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG-GCCGAGCCT 205411 ||| |||||| || ||||| ||||||| | || || || | | ||| | || Sbjct 86959 CTCTCAGCATGGGGACCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCG 86900 Query 205412 TCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCG 205471 || | || | | | || ||| |||| || || || | | |||| ||| ||||| Sbjct 86899 TC-GATCTGATGCAGCTGACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCG 86841 Query 205472 CACTCTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAG 205531 |||| | ||| ||| || |||||| ||||| |||||| || | | ||| || Sbjct 86840 CACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 86781 Query 205532 CACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTGGCGTGGCT 205590 || | ||||| |||| |||||| || || | |||||| || || ||||||| | Sbjct 86780 CAGCTGGACAGCTGTGGC-CTGTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGT 86722 Query 205591 GAAGCGCTTCTCGCTCA-AACA-CCTGTAGGTCTCCA-GCACGCTCTCCAGATCGAAGCC 205647 ||| | ||||| || | | || |||||||||| | | ||| ||| | ||| | Sbjct 86721 GAACCACTTCT--CTGAGAGCAGGTTGTAGGTCTCGATGGCCGC-CTCGATATCTGTTCT 86665 Query 205648 GTGAATACCTATGGCGATCCTCATGAAGAGGTGTTGAGGTCTCTCCATCACCCTCTCGTT 205707 ||| || || | || | ||||| | | ||| ||||| | ||| ||| | | ||| Sbjct 86664 GTGGATGCCGACAGCCACTCTCATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGTT 86605 Query 205708 CACCTTGAGCAGATAGGCTCTCTCTAGGGTGCGGATGGCAAAAAAGTTGAAGG 205760 | ||| | ||| |||| ||||| || || || | |||| |||||| ||| Sbjct 86604 GATCTTCAACAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGG 86552 Score = 165 bits (182), Expect = 1e-35 Identities = 302/435 (69%), Gaps = 8/435 (2%) Strand=Plus/Minus Query 204178 CAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTT 204237 ||| || || || | |||||| || ||||| || || |||| |||||| | | |||| | Sbjct 88050 CAGATGAGGATTCACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCT 87991 Query 204238 GGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297 |||| | | |||| | |||||||||||| | ||||| |||||| |||||||||||| Sbjct 87990 GGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCAT 87931 Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAG-G 204356 || ||||| |||||| ||| | || |||| ||| || | | |||||| ||| Sbjct 87930 CGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAG-GAGCT 87872 Query 204357 TCCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGAC 204416 ||||||| || || |||| || ||||||||||| |||| | |||||||| | Sbjct 87871 TCCAGTCCCACAGGTCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGC 87812 Query 204417 TGACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCTTCTGCCAGCTTGCACGAG 204475 |||| ||| ||| | ||| ||| || ||| || ||| | ||||||| ||| Sbjct 87811 TGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGA-GCTCGGCAGCCAGCTCGCAGCTC 87753 Query 204476 GCGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTA--ATCTGGCGGCCT 204533 || ||| |||| ||||| ||||||||||||||||| ||| | | ||| |||| Sbjct 87752 GCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTG--AGCCT 87695 Query 204534 CCGTTCCGTCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGA 204593 | | | ||||| | || || || | || | || ||||| |||||||| |||| Sbjct 87694 CGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGA 87635 Query 204594 TTCCCAACGGTCTGT 204608 |||| | || |||| Sbjct 87634 TTCCTATTGGCCTGT 87620 Score = 111 bits (122), Expect = 3e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | |||||||| ||| || ||||| ||||| ||||| Sbjct 88979 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGTT 88920 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 ||| |||||||| ||||| ||||| ||| || || || || ||||| || | ||||||| Sbjct 88919 CAGGGACTGGCTCTGGTCAATGAA-GGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861 Query 204036 TCTGCGAAATCTCCCACACCGTCTTGAACA 204065 |||| || || |||||||| || ||| ||| Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACA 88831 >seq39 Length=7185878 Score = 95.1 bits (104), Expect = 2e-14 Identities = 82/102 (80%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 200190 CAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAATATCACGAAG 200249 |||| |||||||| || || ||||| || ||||||||||||||||| | ||| | |||| Sbjct 4278302 CAGAGTGGTTCCGAAGCACCTGGACTCTTCAGGATGACCCTTGTAAGAGATACTATGAAG 4278243 Query 200250 TGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 | ||||| |||| ||| |||| | || ||||||||||||| Sbjct 4278242 TTCTCATGGTCAATCCCATTCTGCTGGTACCTCCAACCAAGG 4278201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795117350612480