Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq14 152 1e-31 seq1563 140 8e-28 seq3289 87.8 4e-12 seq2619 87.8 4e-12 >seq14 Length=1339370 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||||||||||| ||| || | || ||| Sbjct 521504 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTACGGCCGTCT 521563 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| || | ||||||||||||| ||||||||| ||| Sbjct 521564 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTATCC 521623 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || ||| | |||||| | | || || ||||| ||||| ||| Sbjct 521624 TGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCGACCTCCAAAGTGATGGTC 521683 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || |||||||| || || Sbjct 521684 TTACCAGTCAGGGTCTTCACAAAGATCTG 521712 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||||||||||| | || | |||||| Sbjct 521048 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 521107 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||| |||||||||||||||||||| ||| |||||||| ||| Sbjct 521108 TCCAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTATCC 521167 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| || ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 521168 TGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTC 521227 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 521228 TTGCCAGTCAGGGTCTTCACGAAGATCTG 521256 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| ||||| || |||||||| |||| ||||||||| | | || | || ||| Sbjct 521276 AGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCT 521335 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||||||| || || || ||||| || | ||||||||| ||| |||||||| ||| Sbjct 521336 TCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATTCCTTCCTTGTCC 521395 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| |||||| | | || || |||| ||||| ||| Sbjct 521396 TGGATCTTAGCCTTGACGTTCTCGATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTC 521455 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 521456 TTGCCAGTCAGGGTCTTCACGAAGATCTG 521484 >seq1563 Length=18910200 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 5355788 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 5355847 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 5355848 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5355907 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| ||| || || |||| ||||| || Sbjct 5355908 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGT 5355967 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||| ||||| || || Sbjct 5355968 CTTGCCAGTGAGGGTTTTGACAAAGATCTG 5355997 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 5356700 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 5356759 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| | | ||||||||| || ||| ||||| || Sbjct 5356760 TTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5356819 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | ||| || ||| || || |||| ||||| || Sbjct 5356820 CTGGATCTTGGCCTTGACATTCTCAATGGTATCGCTTGGCTCGACCTCCAGGGTGATGGT 5356879 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 5356880 CTTGCCTGTGAGGGTTTTCACAAAGATCTG 5356909 Score = 140 bits (154), Expect = 8e-28 Identities = 157/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 5357156 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 5357215 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | ||||||||| || ||| ||||| || Sbjct 5357216 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5357275 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | ||| || | | || || || | ||||| || Sbjct 5357276 CTGGATCTTGGCTTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATGGT 5357335 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| ||||||||||| || || Sbjct 5357336 CTTGCCAGTGAGGGTTTTCACAAAGATCTG 5357365 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 5350605 CAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 5350664 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 5350665 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5350724 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | |||||| | | ||| || |||| ||||| || Sbjct 5350725 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGT 5350784 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || || || || || Sbjct 5350785 CTTGCCGGTGAGGGTCTTGACGAAGATCTG 5350814 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 5351061 CAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 5351120 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 5351121 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5351180 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| |||||| ||| || |||| |||||| ||| || || || | ||||| || Sbjct 5351181 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCAACCTCAAGGGTGATGGT 5351240 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || ||||| || || Sbjct 5351241 CTTGCCAGTGAGGGTCTTGACAAAGATCTG 5351270 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 5356016 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 5356075 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||| ||||| || | ||||||||| || ||| ||||| || Sbjct 5356076 TTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5356135 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| | | ||| || |||| ||||| || Sbjct 5356136 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCACTGGGTTCAACCTCCAGGGTGATGGT 5356195 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || ||||| || || Sbjct 5356196 CTTGCCAGTAAGGGTCTTGACAAAGATCTG 5356225 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 5356244 CAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 5356303 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 5356304 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5356363 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||||||| || | |||||| ||| || || |||| ||||| || Sbjct 5356364 CTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGCTTGGCTCAACCTCCAGGGTGATGGT 5356423 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || || || || || Sbjct 5356424 CTTGCCGGTGAGGGTCTTGACGAAGATCTG 5356453 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 5350833 CAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 5350892 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 5350893 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5350952 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| |||||| || | |||||| ||| || || |||| ||||| || Sbjct 5350953 CTGGATCTTGGCTTTCACGTTCTCAATGGTGTCACTTGGCTCAACCTCCAGGGTGATGGT 5351012 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || || || || ||||| || || Sbjct 5351013 CTTGCCTGTAAGGGTCTTGACAAAGATCTG 5351042 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || ||||| || |||||||| |||| ||||||||||| | || | ||||| Sbjct 5356472 CAGGACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATC 5356531 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 5356532 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5356591 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| ||| || || |||| ||||| || Sbjct 5356592 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCGACCTCCAGGGTGATGGT 5356651 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || || || || || Sbjct 5356652 CTTGCCAGTGAGGGTCTTGACGAAGATCTG 5356681 Score = 127 bits (140), Expect = 5e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 ||||||||| ||||| || |||||||| |||| |||||||||| | || | ||||| Sbjct 5356928 CAGGACAAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCAGAGAGGGTGCGGCCATC 5356987 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || || ||||| || | ||||||||| || ||| ||||| || Sbjct 5356988 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTGTC 5357047 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| || || | |||||| ||| || || || | ||||| || Sbjct 5357048 CTGGATCTTGGCCTTGACATTCTCAATGGTGTCGCTTGGCTCAACCTCAAGGGTGATGGT 5357107 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || ||||| || || ||||| || || Sbjct 5357108 CTTGCCTGTGAGGGTCTTGACAAAGATCTG 5357137 >seq3289 Length=18717 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||||| || || | |||||| |||||||| || || |||||| Sbjct 9031 CCTTTCTGGATGTTGTAGTCAGACAGTGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAG 9090 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||||||| || ||||||| Sbjct 9091 ATCAGACGCTGCTGGTCAGGGGGAATTCCT 9120 >seq2619 Length=386543 Score = 87.8 bits (96), Expect = 4e-12 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 199440 CCTTT-TGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||||||||||| || || | |||||| |||||||| || || |||||| Sbjct 17900 CCTTTCTGGATGTTGTAGTCAGACAGTGTGCGTCCATCCTCCAGCTGTTTGCCAGCGAAG 17841 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 || |||||||||||||| || ||||||| Sbjct 17840 ATCAGACGCTGCTGGTCAGGGGGAATTCCT 17811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178864080415136