Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq3265 149 2e-30 >seq3265 Length=3892940 Score = 149 bits (164), Expect = 2e-30 Identities = 456/695 (66%), Gaps = 15/695 (2%) Strand=Plus/Plus Query 450917 ATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAATGTA 450976 ||||| || ||||| || ||||||| ||| ||||| || |||| ||| |||| || || Sbjct 1639901 ATTGGCATCGATCTGGGCACCACCTATTCCTGTGTTGGGGTTTTCCAGCATGGCAAAGTG 1639960 Query 450977 GAAATTATAGCAAATGACCAAGG-ATCACGAACTACTCCTTCATGGGTAAGT----TTTA 451031 || || || || || ||||| || | || || | ||||| || | || || |||| Sbjct 1639961 GAGATCATCGCCAACGACCAGGGCAACAGGACC-ACTCC--CA--GCTATGTGGCCTTTA 1640015 Query 451032 CGGATTCAGAAAGACTTTTAGGGCAAGCTGCTAA-ATCAATGGTAAATTCAAATGCCAAA 451090 | || |||| || ||| | || | ||||| || | | | | | | || ||| Sbjct 1640016 CTGACACAGAGAGGCTTATTGGAGATGCTGCCAAGAACCAGGTTGCCATGAACC-CCACC 1640074 Query 451091 AACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAA 451150 |||||||| | ||| || ||||| | ||||| | | || | |||| | ||| || Sbjct 1640075 AACACAGTCTTTGACGCCAAACGACTCATTGGAAGAAAGTTTAATGACCCTGTTGTCCAG 1640134 Query 451151 AAAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAAAAGGAAAGCCCTATATTCAA 451210 || | ||| | | ||| | || | ||| | || ||||||||| | |||| Sbjct 1640135 TCCGACATGAAACTGTGGCCTTTCAAGGTGATCAATGATAACGGAAAGCCCAAAGTTCAG 1640194 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || | ||||||||||| || || | ||| || || ||||| || || ||||| || Sbjct 1640195 GTGGAGTATAAAGGTGAGACCAAGGCCTTTTACCCAGAGGAAATCTCGTCCATGGTCCTG 1640254 Query 451271 ACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATT 451330 ||||||||| || | ||| || || | || || | ||||||| || Sbjct 1640255 GTTAAAATGAAGGAGATAGCTGAGGCCTACCTGGGACAGAGGGTGTCAAATGCAGTCATC 1640314 Query 451331 ACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATT 451390 || || || ||||||||||| || | ||| ||||||| || || ||||||||| ||| Sbjct 1640315 ACAGTGCCAGCTTATTTCAACGACTCTCAAAGGCAAGCCACAAAGGATGCAGGAGTCATT 1640374 Query 451391 GCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGGA 451450 |||| | ||||| || | || || ||||| || |||||||| || | || ||||| Sbjct 1640375 TCTGGACTGAATGTCCTGAGGATCATCAATGAGCCCACAGCAGCAGCCATTGCCTATGGC 1640434 Query 451451 CTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGGA 451510 || ||| || | ||| || ||| ||| | | | |||||| | |||||||| Sbjct 1640435 CT-GGATAAGGGTA--AAAGAGGAGAGCGCAATGTGCTCATCTTTGATCTCGGTGGAGGC 1640491 Query 451511 ACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAAT 451570 || |||| || | || | ||||||||||| | || || ||||| || || Sbjct 1640492 ACCTTTGATGTGTCCATCCTGACCATTGAAGATGGCATCTTCGAGGTAAAAGCCACTGCA 1640551 Query 451571 GGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || || || || || || || || |||| || Sbjct 1640552 GGAGACACACACCTTGGTGGAGAGGACTTTGACAA 1640586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975622004699264