Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq3265 266 2e-65 seq10 113 3e-19 seq2267 105 5e-17 seq1563 102 6e-16 seq1078 95.1 9e-14 >seq3265 Length=3892940 Score = 266 bits (294), Expect = 2e-65 Identities = 948/1469 (65%), Gaps = 16/1469 (1%) Strand=Plus/Minus Query 517249 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 517308 ||| || |||| | |||||| ||||| || ||||| || | ||||| || || || | Sbjct 1641361 TTTGTCGACGGCGGACACATTCAGAATGCCGTTGGCGTCAATGTCAAAAGTTACCTCCAC 1641302 Query 517309 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 517368 || || || |||| ||||||| ||||| ||| | | |||| | ||||| || Sbjct 1641301 CTGTGGCACACCTCGGGGAGCAGGAGGGATACCTGTGAGCTCAAATTTGCCCAGGAGGTT 1641242 Query 517369 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 517428 || || || || | || |||||||| | | || || || | | ||||| Sbjct 1641241 GTTGTCCTTGGTCATGGCTCTCTCACCCTCATACACCTGAATCAGCACACCTGGCTGATT 1641182 Query 517429 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 517487 |||||| || || | || | ||||| ||| || || || || ||||| | | | Sbjct 1641181 ATCTGAGTATGTGGAGAAGA-TCTGGGTTTGCTTGGTGGGGATGGTAGTGTTGCGTTTGA 1641123 Query 517488 TAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 517547 | | | ||||||| |||||||| || || | || ||||| || |||| || || | Sbjct 1641122 TTAGAGGTGTCATAACTCCACCTGCGGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCA 1641063 Query 517548 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 517607 || | | || ||| | || || ||| | ||| | || ||||| || |||| | Sbjct 1641062 GCAGCAGCAGATCTTGGACATTCTCTGAAGTGTCACCCATGAGGATAGCAGCCTGAACTG 1641003 Query 517608 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 517667 | ||||| || || ||||||||||| || || | | | || || | | ||||| | Sbjct 1641002 CTGCACCGTAGGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGATCCCTGCCATTAA 1640943 Query 517668 AAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 517726 | |||| || |||| || | | || ||||| | | || || ||||| | || Sbjct 1640942 AGAAATCCTGCAAGAGCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACG 1640884 Query 517727 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 517786 |||||||| | || | |||||||| || | ||| | |||| ||||| || || Sbjct 1640883 ATTTCATGGATCTTGGCCTTATCCAGCTTGGCATCTTGCAGGGCTTTCTCAACTGGCTCC 1640824 Query 517787 AGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 517846 || | || || | ||||| ||||| || || ||||| || | | | Sbjct 1640823 AGTGTTCCCCTGAAGAGCTCTGAGTTGAGTTCCTCAAAGCGTGCTCTTGTGATGGAGGTG 1640764 Query 517847 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 517906 | ||||||| ||||| || | ||| |||| ||||| ||| || || ||| || Sbjct 1640763 TAGAAATCAATGCCTTCAAATAGAGAGTCAATCTCAATGCTAGCCTGGGTGCTAGAGGAC 1640704 Query 517907 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT-- 517964 || | | || || | ||||| ||||| | ||||| | | ||| | || ||| Sbjct 1640703 AGGGTCCTCTTCGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCT--CTTATTTT 1640646 Query 517965 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 518024 | | | || | || | ||||| || || || || ||| | | || | || | Sbjct 1640645 GGCTGATGTCCTTCTTGTGCTTTCTTTTAAATTCCTCTACAAAGTGGCTGACCATCCGGT 1640586 Query 518025 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 518084 | ||||| || || || || | | || | ||||| || ||| |||| | ||| | | Sbjct 1640585 TGTCAAAGTCCTCTCCACCAAGGTGTGTGTCTCCTGCAGTGGCTTTTACCTCGAAGATGC 1640526 Query 518085 CATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 518144 ||||||||| | || | | |||||| ||| || ||||| | |||||| || || | Sbjct 1640525 CATCTTCAATGGTCAGGATGGACACATCAAAGGTGCCTCCACCGAGATCAAAGATGAGCA 1640466 Query 518145 CATTCATTTCTTTGTCTTGGTTT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 |||| ||| |||| || ||||| || ||||| |||| || || || || | Sbjct 1640465 CATTGCGCTCTCC-TCTT--TTACCCTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGG 1640409 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | ||||| || || |||| ||||| || |||| ||| ||||||||| || ||||||| Sbjct 1640408 GCTCATTGATGATCCTCAGGACATTCAGTCCAGAAATGACTCCTGCATCCTTTGTGGCTT 1640349 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACT-TCTTTA 518320 | ||||| || ||||| ||||| || || || || || || |||| | || ||| | Sbjct 1640348 GCCTTTGAGAGTCGTTGAAATAAGCTGGCACTGTGATGACTGCATTTGACACCCTCTGTC 1640289 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 ||| || || || | | ||||||||| | | ||| || || |||| ||| Sbjct 1640288 CCAGG-TAGGCCTCAGCTATCTCCTTCATTTTAACCAGGACCATGGACGAGATTTCCTCT 1640230 Query 518381 GGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACA 518440 ||| || | ||||| ||| || ||| || | || | || || | || Sbjct 1640229 GGGTAAAAGGCCTTGGTCTCACCTTTATACTCCACCTGAACTTTGGGCTTTCCGTTATCA 1640170 Query 518441 TTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCT 518500 || || || || || ||||| |||||| || || || ||| |||||||||| | | Sbjct 1640169 TTGATCACCTTGAAAGGCCACAGTTTCATGTCGGACTGGACAACAGGGTCATTAAACTTT 1640110 Query 518501 CTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATAT 518560 || ||||| | |||||| || ||||| | || ||||| || || || ||| | || | Sbjct 1640109 CTTCCAATGAGTCGTTTGGCGTCAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGGTTC 1640050 Query 518561 TTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTG 518620 ||||| ||||||||||| || ||||| || ||||| | ||||| ||||| || Sbjct 1640049 TTGGCAGCATCTCCAATAAGCCTCTCTGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTC 1639990 Query 518621 CGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAA 518680 | || || || || || || || || || ||||| |||| || | || || ||||| Sbjct 1639989 CTGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACCCCAACACAG 1639930 Query 518681 CTAAAAGTTGTTCCTAAATCAATACCAAT 518709 | | || || || | ||| || ||||| Sbjct 1639929 GAATAGGTGGTGCCCAGATCGATGCCAAT 1639901 >seq10 Length=14175190 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| ||||||||||| || ||||| || || | || ||| Sbjct 9605641 TTTTTGTCCAGGCCATAAGCAATGGCAGCAGCAGTGGGCTCATTGATGATGCGCAGCACA 9605582 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||||||| ||| |||||||| ||||| || | || || || || || || Sbjct 9605581 TTAAGCCCAGCAATGGCTCCAGCATCTTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 9605522 Query 518285 GCAGGAACAGTAATAACGGCAT 518306 |||||||| |||||||| |||| Sbjct 9605521 GCAGGAACTGTAATAACTGCAT 9605500 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||| || || ||||| ||||||||||| | ||||| || || ||||| ||||||||| Sbjct 9606879 GCAGAGACGTTGAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGGACC 9606820 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 ||||| |||||||||| || || || | ||| | ||||| |||||||||| || Sbjct 9606819 CCTCTGGGAGCAGGTGGAATACCAGTCAGCTCAAACTTGCCCAGGATATTATTATCCTTG 9606760 Query 517379 GT 517380 || Sbjct 9606759 GT 9606758 >seq2267 Length=663809 Score = 105 bits (116), Expect = 5e-17 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 ||||| || || ||||| |||| |||||||||||| || ||||| || || | || |||| Sbjct 516136 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTCGGCTCATTGATGATACGCAGAACA 516077 Query 518225 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 518284 ||||| |||| ||| | ||||| ||||| ||||| || | || || || || || || Sbjct 516076 TTAAGCCCAGAAATGGTCCCTGCGTCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 516017 Query 518285 GCAGGAACAGTAATAACGGCATCAGTTA 518312 ||||| ||||| | || |||| |||| Sbjct 516016 GCAGGTACAGTCACCACAGCATTTGTTA 515989 >seq1563 Length=18910200 Score = 102 bits (112), Expect = 6e-16 Identities = 134/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 518582 |||| | || ||||| || || || ||| | |||| |||||||||||||||||||| Sbjct 1054937 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATCAGCC 1054878 Query 518583 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 518642 || || ||||| || | || || || || || | || ||||||||||| |||| Sbjct 1054877 TCTCAGTATCTGTGAAAGCCACGTAGCTGGGTGTGGTCCTGTTGCCTTGATCATTGGCAA 1054818 Query 518643 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 518702 | || |||||||| |||| ||| | ||||| ||||| | || || || | ||||| Sbjct 1054817 TGATCTCAACTTTGCCATGTTGGAACACACCAACACAGGAGTAGGTGGTGCCAAGATCAA 1054758 Query 518703 TACCAA 518708 |||||| Sbjct 1054757 TACCAA 1054752 Score = 95.1 bits (104), Expect = 9e-14 Identities = 134/187 (72%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 518523 CAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTT-GGCTGCATCTCCAATCAGA 518581 |||| | || ||||| || || || ||| | |||| || |||||||||||||||||| Sbjct 1043116 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTCTTAGGCTGCATCTCCAATCAGC 1043175 Query 518582 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 518641 || || ||||| || | || || || || || | || ||||||||||| ||| Sbjct 1043176 CTCTCAGTATCTGTGAAAGCCACGTAGCTGGGTGTGGTCCTGTTGCCTTGATCATTGGCA 1043235 Query 518642 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 518701 || || |||||||| |||| ||| | ||||| ||||| | || || || | |||| Sbjct 1043236 ATGATCTCAACTTTGCCATGTTGGAACACACCAACACAGGAGTAGGTGGTGCCAAGATCA 1043295 Query 518702 ATACCAA 518708 ||||||| Sbjct 1043296 ATACCAA 1043302 >seq1078 Length=26957 Score = 95.1 bits (104), Expect = 9e-14 Identities = 436/689 (63%), Gaps = 2/689 (0%) Strand=Plus/Minus Query 517973 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 518032 ||| | || | ||| |||||||| || || ||| | | || | ||||| ||||| Sbjct 7240 TCTTTCTTGTGTTTCCTCTTGAACTCCTCCACAAAGTGGTTGACCATGCGATTGTCAAAG 7181 Query 518033 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 518092 || || || |||| | ||| | ||| | ||| ||| | || | || | || ||||| Sbjct 7180 TCCTCTCCACCCAGGTGAGTGTCTCCGGCCGTGGCTTTCACCTCAAAGATACCGTCTTCG 7121 Query 518093 AGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 518152 | | || | | || || ||| || ||||||| |||||||| || || || | Sbjct 7120 ATTGTCAGGATGGACACGTCGAAGGTGCCTCCACCCAGGTCAAAAATCAGGACGTTACGT 7061 Query 518153 TCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 518211 ||| || ||| ||| || ||||| ||||| | || || || || || || || || Sbjct 7060 TCTCCTGACTTTCCTTTG-TCCAGACCGTACGCGATGGCGGCTGCCGTCGGCTCGTTGAT 7002 Query 518212 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 518271 || |||| || || || || || || |||||||||||||| || |||| || || Sbjct 7001 GATCCTCAGGACGTTCAGTCCTGCGATGACGCCTGCATCTTTAGTCGCCTGTCGCTGGGA 6942 Query 518272 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGC 518331 ||||| || || || || || || || || || | | || | || || | || || Sbjct 6941 GTCGTTGAAGTACGCCGGGACTGTGATGACAGCGTTGGACACCTTTTGGCCGAGGTAGGC 6882 Query 518332 GCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTG 518391 || | | ||||| || | | ||| || || || | || ||| | | Sbjct 6881 CTCAGCGATCTCCTTCATCTTCACCAGGACCATGGAGGAGATCTCCTCAGGGTAGAAGGC 6822 Query 518392 CTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTT 518451 ||| |||| || ||| || | || | || || ||| | ||| || || Sbjct 6821 TTTGTCTTCACCTTTATACTCCACCTGAATTTTGGGCTTCCCTCCATCTGAAATCACCTT 6762 Query 518452 AAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAA 518511 || ||||||| ||||| || | || || | |||| ||| | ||| ||||| | Sbjct 6761 GAAGGGCCAGTGCTTCATGTCAGCCTGCACCACTGAATCATCAAACTTTCTTCCAATCAG 6702 Query 518512 TCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATC 518571 || || |||||||| | ||| ||| | || || | || | || | ||||| || || Sbjct 6701 TCTCTTGGCATCAAACACAGTGTTGCTGGGGTTCAGAGCCACCTGGTTCTTGGCGGCGTC 6642 Query 518572 TCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTG 518631 |||||||| || || || || || | ||||| || || || | || || || Sbjct 6641 CCCAATCAGCCTCTCGGTATCAGTGAAGGCCACATAGCTGGGGGTGGTCCTGTTGCCCTG 6582 Query 518632 ATCATTCGCAATAATTTCAACTTTACCAT 518660 || || || || ||||| ||||| |||| Sbjct 6581 GTCGTTGGCGATGATTTCTACTTTCCCAT 6553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780633434496448