Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq2387 165 1e-35 seq2122 87.8 2e-12 seq963 87.8 2e-12 seq375 87.8 2e-12 seq52 87.8 2e-12 >seq2387 Length=643009 Score = 165 bits (182), Expect = 1e-35 Identities = 888/1396 (64%), Gaps = 36/1396 (3%) Strand=Plus/Plus Query 111704 GTTCATCCACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCAAATGTCCAG 111763 ||||| |||||| | || || |||||||| ||||| || || || || ||||||| Sbjct 86718 GTTCACCCACGCCTCTCCTACACTCTTCAATGCTGGAACCAACAGGCCACAGCTGTCCAG 86777 Query 111764 TTGTTTCCTTATTGCAAACAAGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGA 111823 || ||||| | || | ||||| || ||| | |||||||| | ||| || | | Sbjct 86778 CTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTATGACACGCTGAAGCA 86837 Query 111824 ATGTGCCCAAATCTCAAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATG--TCAGA 111881 || |||| ||||| || | ||| || || ||||| || || | || ||||| Sbjct 86838 GTGCGCCCTCATCTCCAAATCGGCCGGAGGAATCGGCGTGGCGGTCA--GCTGCATCAGA 86895 Query 111882 GCCAACAAGTCTCGTATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTT 111941 | | | ||| || || ||||| | || | || | | || ||||| Sbjct 86896 TCGACGGGGAGCTACATTGCCGGAACCAATGGCAATTCCAACGGGCTGGTCCCCATGCTG 86955 Query 111942 CGCGTATTTAACGCCACAGCGCGCTATGTAAACCAAGCTGGGCGTCGCAAG----GGATC 111997 | || | ||| ||| || || || || |||| | ||| | | || ||| | Sbjct 86956 AGAGTTTACAACAACACGGCCCGTTACGTCGACCAGGGTGG-CAACAAGAGACCCGGAGC 87014 Query 111998 TATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCT 112057 |||| | || || |||||||||||| || | | || ||||| ||| || Sbjct 87015 CTTCGCCATGTACCTGGAGCCATGGCACTTTGACGTTTTCGACTTCCTGGAGCTGAAGAA 87074 Query 112058 CAACCAAGGTGATGAGGAGGCGCGGTGCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAG 112116 ||| ||| | |||||| | | ||| | ||||| |||| ||| || ||||| || | Sbjct 87075 GAACACAGGGAAGGAGGAG-CAAAGAGCCAGAGATCTTTTCTACGCCCTGTGGATCCCCG 87133 Query 112117 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACA 112173 | | ||||||||||| || |||||| | | ||||| || | ||||| || Sbjct 87134 ACTTGTTCATGAAGAGGGT---GGAGAGCAACCAAGACTGGTCCCTGATGTGTCCGAACG 87190 Query 112174 AGGCACCCGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTAC 112232 || ||||| || ||| ||| | ||| |||||||| || | |||||||| || ||| Sbjct 87191 AGTGCCCCGGGCTGGACGAGTGCTG-GGGAGAGGAGTTCGAGGAGCTCTACACCAAATAC 87249 Query 112233 GAGGAAGAAAGTCGGGCGACTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT 112291 ||| | || | ||| | |||| |||| ||| | ||||| | || ||| | Sbjct 87250 GAGAAGGAGGGGAGGGTCAA-GCGAGTGGTGAAGGCTCAGCAGCTGTGGTACGCCATTAT 87308 Query 112292 CAAGTCTCAAACCGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAA 112351 | |||| || || || || ||||||||||| ||||| |||||||||||||| ||| || Sbjct 87309 CGAGTCCCAGACAGAAACCGGTACACCATACATGCTGTACAAAGACGCCTGCAACAGGAA 87368 Query 112352 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGA 112411 ||| || || |||| |||| ||||| | ||||||||| ||||||||| | || Sbjct 87369 GAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAACCTCTGCACAGAAATCGTTGA 87428 Query 112412 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 112471 || || | | |||||| || || ||||| || || || ||||||||| || ||| Sbjct 87429 ATACACCAGCGAGGATGAGGTAGCGGTCTGTAATCTGGCCTCCATCGCTCTCAACATGTA 87488 Query 112472 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 112531 ||| || || | ||| ||||| | | |||| || | || || ||| | Sbjct 87489 TGTCACACCTGA---ACGGACTTTTGACTTTAAAAAGCTGGCGTATGTGACCAAAGTAAT 87545 Query 112532 CACAAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGT---TGAGACTGCTCG 112588 | |||||||| |||| | || || | || | || || || ||| || Sbjct 87546 CGTCAAAAACCTGAACAAGATCATAGACATTAACTACTATCCGGTGCCTGA---AGCAGA 87602 Query 112589 TAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATT 112648 || || || | | | ||| | ||||| || ||||||| || ||| | || |||| || Sbjct 87603 GAAGTCCAACAAGCGCCACAGGCCAATAGGAATCGGTGTGCAGGGTTTGGCTGATGCCTT 87662 Query 112649 CATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATT 112708 ||| || || || | ||||| | ||| || || | || | | || || Sbjct 87663 CATCCTGATGCGTTACCCCTTTGAAAGTGCCGAGGCTCAGCTGCTGAACACCCAGATCTT 87722 Query 112709 TGAGACAATGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCC 112768 |||||| || || ||||||| || |||||||| | ||| |||| | | || || Sbjct 87723 TGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCTGCCGAGCTCGGCCC 87782 Query 112769 ATATGAAACCTTTGAGGGTTCTCCAG-CTTCACAAGGGGTGCTTCAATTTGATATGTGGG 112827 || || || | | || || || | | || |||| | || || | || ||||||| Sbjct 87783 CTACGAGACATACCAAGGCTCCCCCGTCAGCA-AAGGCATCCTCCAGTACGACATGTGGG 87841 Query 112828 AAGGTGA-GACCAAGCTTCACTACGACTGGGACGCT-CTCAAGGAACGCATCAAGGAGAA 112885 || || | ||| | | |||| ||| ||| || ||||| ||| | | Sbjct 87842 -AGAAGACGCCCACTGACCTGTGGGACT-GGAAGCTCCTGAAGGAGAAGATCGCCAAACA 87899 Query 112886 GGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTT 112945 || | | ||||| || || |||| || ||||| || ||||||||||| || ||| | Sbjct 87900 CGGAGTCAGGAACAGCCTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCT 87959 Query 112946 GGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGC 113005 ||| || || || | | | || ||||||| | |||||||| | || |||| | Sbjct 87960 GGGCAACAACGAGTCCATCGAGGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCTC 88019 Query 113006 GGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTG 113065 |||||||| ||| || || ||||| | | ||| | | ||||| || || || Sbjct 88020 TGGAGAGTTCCAGATCGTGAATCCTCATCTGCTCAAAGACTTGACAGAGAGAGGACTGTG 88079 Query 113066 GTCCAAGGATATGAAG 113081 | |||| |||||| Sbjct 88080 GAGTGAGGAGATGAAG 88095 >seq2122 Length=1387681 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 |||||| | | || ||||| ||| ||||| |||||||||||||| || ||| || Sbjct 1083500 GAGCGAATTGTGGCTTTTGCAGCTGTGGAGGGAATCTTCTTCTCTGGCTCATTCGCTGCC 1083559 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 || ||||||||||||||| |||| || ||||| || || || ||||| ||||| ||| Sbjct 1083560 ATCTATTGGCTCAAGAAGAGAGGCCTAATGCCCGGGCTTACCTATTCCAATGAGCTGATC 1083619 Query 102300 TCTCGTGACGAGG 102312 | | || |||| Sbjct 1083620 AGTAGGGATGAGG 1083632 >seq963 Length=229635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || ||||| ||| ||||| ||||||||||||||||| ||| || || | ||||| Sbjct 212581 GCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTG 212640 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 212641 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 212700 Query 102312 G 102312 | Sbjct 212701 G 212701 >seq375 Length=30079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || ||||| ||| ||||| ||||||||||||||||| ||| || || | ||||| Sbjct 25795 GCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTG 25736 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 25735 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 25676 Query 102312 G 102312 | Sbjct 25675 G 25675 >seq52 Length=1057507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 102192 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 102251 || ||||| ||| ||||| ||||||||||||||||| ||| || || | ||||| Sbjct 14066 GCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTG 14007 Query 102252 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 102311 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 14006 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 13947 Query 102312 G 102312 | Sbjct 13946 G 13946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620712852661760