Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq2387 226 3e-54 seq1563 91.5 2e-13 >seq2387 Length=643009 Score = 226 bits (250), Expect = 3e-54 Identities = 904/1396 (65%), Gaps = 54/1396 (4%) Strand=Plus/Minus Query 105935 TAGATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 105994 |||||||| | ||||||| || | | | || || || |||| ||| || ||||||||| Sbjct 88001 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 87942 Query 105995 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTGATGCGTTCC 106054 || || ||||| || |||| || || ||||| | | || | || ||| ||| Sbjct 87941 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCC 87882 Query 106055 TTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATATCAAATTGAA 106112 || || | | |||||| | | | || | || || || ||||||| || | || | Sbjct 87881 TTCAGGAGCTTCCAGTCCCACAGGTCAG-TGGGCGTCTTCT-CCCACATGTCGTACTGGA 87824 Query 106113 GCACCCCTTGG--GACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 | | |||| | |||| ||||| || | ||||||| |||| || | | |||| Sbjct 87823 GGATGCCTTTGCTGACGGGGGAG--CCTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAGC 87766 Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 || || |||||||||||||||| |||| || ||||| |||||||| | | |||| Sbjct 87765 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAG 87706 Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACC 106290 | || || || | ||||| | ||| || || || || |||| || | ||| Sbjct 87705 CAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACC 87646 Query 106291 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---AC 106347 || ||||| | || || || ||||| ||| | || ||||| | | | ||| || Sbjct 87645 CTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTT---CTCTGCTTCAGGCAC 87589 Query 106348 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 106407 ||||| | || |||| |||| ||| || |||||| || || | || | | Sbjct 87588 CGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTG---ACGATTACTTTGGTCAC 87532 Query 106408 ATGA---AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAAG 106461 || || |||| | | |||||||| || |||| |||||||| | || Sbjct 87531 ATACGCCAGCTTTTTAAAGTCAAAAGTCCG------TTCAGGTGTGACATACATGTTGAG 87478 Query 106462 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 106521 ||||| || |||| ||| || || || |||||||| ||||| || | ||||| Sbjct 87477 AGCGATGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTC 87418 Query 106522 TGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCA 106581 ||| || | |||| | || || || |||| |||| ||||| ||||| ||||||| Sbjct 87417 TGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCA 87358 Query 106582 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTT 106641 || || ||||| |||||||| || || || || || ||||| |||| || ||| || | Sbjct 87357 GGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTA 87298 Query 106642 CCACACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGT 106700 ||||| | | | | || || | || ||| ||| |||||| |||||| || |||| Sbjct 87297 CCACAGCTGCTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCGTATTTGGTGT 87239 Query 106701 AGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACAG 106759 |||| | || |||||||| ||| | || ||| || || || || || ||||| Sbjct 87238 AGAGCTCCTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACAC 87180 Query 106760 AAAAGAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCAC 106816 | || ||||| ||| | |||| |||| ||||||||| | ||| || |||||| Sbjct 87179 ATCAGGGACCAGTCTTGGTTGCTCTCC---ACCCTCTTCATGAACAAGTCGGGGATCCAC 87123 Query 106817 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTC 106875 |||| | || |||||||| | ||| || | ||| ||| || | | ||| Sbjct 87122 AGGGCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCT-TCTTCAGCTC 87064 Query 106876 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CT 106931 ||||| || | | || |||||||||||| || || | |||| | ||| || Sbjct 87063 CAGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCT 87004 Query 106932 TTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 106991 | | ||| | | || | || || || || ||| ||| | || | ||||| || | Sbjct 87003 CTTGTTGCC-ACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGA 86945 Query 106992 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT-TGGCTCTCA--CAT 107048 | || | || | ||||| || || ||| || | | | ||| | || Sbjct 86944 CCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGT-AGCTCCCCGTCGATCTGATGCAG 86886 Query 107049 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 107108 | || || || || || || ||| | || ||||| | || |||| | | || | Sbjct 86885 CT--GACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCG 86828 Query 107109 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 107168 | |||| || || | ||| ||| ||||| |||||| |||||||| ||||||| || Sbjct 86827 TGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCT 86768 Query 107169 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGG 107227 | || || || |||||||||||||| || || | ||||| ||||| || | | Sbjct 86767 GTGGCCTGTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAAC-CACTTCTCT 86709 Query 107228 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCC 107287 || | | || ||| ||||| | | | | || || ||| | ||||||||||| ||| Sbjct 86708 GAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCC 86649 Query 107288 ACACGCATAAACATGT 107303 || | ||| | ||||| Sbjct 86648 ACTCTCATTAGCATGT 86633 >seq1563 Length=18910200 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 106504 TGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 106563 ||||||||||| || ||||| |||| ||| || || || |||| ||||| || Sbjct 8605800 TGTGTACTCTACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTG 8605859 Query 106564 GTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 106623 ||| ||||| |||| || || ||||||||||||||||| || || || || || ||||| Sbjct 8605860 GTTGCTCTTCCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTG 8605919 Query 106624 TGACT 106628 ||||| Sbjct 8605920 TGACT 8605924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589952716913920