Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2387 194 2e-44 seq1563 89.7 6e-13 seq2122 82.4 9e-11 >seq2387 Length=643009 Score = 194 bits (214), Expect = 2e-44 Identities = 621/956 (65%), Gaps = 18/956 (2%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 ||| || | || || || || || || |||||||| || |||||||||| | || Sbjct 87491 ACATACATGTTGAGAGCGATGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTG 87432 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTA 47984 |||| | ||||| | || || || | |||||||| || |||| || || || || Sbjct 87431 TATTCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTG 87372 Query 47985 TTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGAT 48044 | |||| || ||||| ||||| ||||| | ||||| || |||||| |||| || Sbjct 87371 CTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGAC 87312 Query 48045 TCAATGATAGATTTCCAAACAG-TCCT-AGCCTTTATAACAGCTCTAGCTTTATTATCAT 48102 || || || | | ||| ||| | || |||||| || | || |||| | || Sbjct 87311 TCGATAATGGCGTACCA--CAGCTGCTGAGCCTT-----CACCACTCGCTTGACCCTCCC 87259 Query 48103 GT-----TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATA-CACATTATCTAACC 48156 | |||||||| || || | || ||| || || || || | ||| | || | || Sbjct 87258 CTCCTTCTCGTATTTGGTGTAGAGCTCCTCGAACTCCTCTCCCCAGCAC-TCGTCCAGCC 87200 Query 48157 CAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAA 48216 | || || || || |||||||||| ||||| || | | | | || || |||| | Sbjct 87199 CGGGGCACTCGTTCGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCATGA 87140 Query 48217 ATATATCTGGTATCCAAAGAGC-TATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCA 48275 | | || || ||||| || || || ||| | ||| || | |||| | || || || || Sbjct 87139 ACAAGTCGGGGATCCACAGGGCGTAGAAA-AGATCTCTGGCTCTTTGCTCCTCCTTCCCT 87081 Query 48276 CTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATT 48335 | ||| | || || || || ||||| | | ||| |||||||| || | || || Sbjct 87080 GTGTTCTTCTTCAGCTCCAGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATG 87021 Query 48336 GCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAA 48395 || | | || |||| || || || || || || | || | ||| || ||||| ||| Sbjct 87020 GCGAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAA 86961 Query 48396 ACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCA 48455 ||||| | ||| ||||| | || || || | ||||||||||| | ||| || || || Sbjct 86960 ACTCTCAGCATGGGGACCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCC 86901 Query 48456 CTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCA 48515 | | ||| || || | | | || || || || ||| ||| || || || || Sbjct 86900 GTCGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCG 86841 Query 48516 CACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAA 48575 ||| | || || || |||||||| ||||| || || || || |||| | || || Sbjct 86840 CACTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 86781 Query 48576 CAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATA 48635 || || |||| || || ||||| | ||| || | ||| ||||| || || | Sbjct 86780 CAGCTGGACAGCTGTGGCCTGTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTG 86721 Query 48636 AACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGT 48695 ||||| |||||||| | || || || || || || | | || ||||| | || Sbjct 86720 AACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTCTGTGG 86661 Query 48696 ATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTATTTATT 48755 || || | || || | ||||| ||| | ||||| | || | | ||| || || || Sbjct 86660 ATGCCGACAGCCACTCTCATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGTTGATC 86601 Query 48756 TTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 ||||| || || || | |||| || || || ||||| ||||||| || || || Sbjct 86600 TTCAACAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATC 86545 >seq1563 Length=18910200 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 47907 ACCTCATTTGGATTAGTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTA 47966 ||||| | ||| | || || | || ||| || | || ||||| | ||||||| || Sbjct 8605786 ACCTCGTCTGGGCTTGTGTACTCTACTATCTCTGTGCACAGATTGCTGGATTTGATGGTG 8605845 Query 47967 CCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTT 48026 |||| ||| || || || | ||||||| ||||||||||| ||||| | ||||| Sbjct 8605846 CCCAGATTCTGCTGGTTGCTCTTCCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTG 8605905 Query 48027 CCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 ||||||||| |||| || |||||||| || | ||| Sbjct 8605906 CCAGTTTCTGTCTGTGACTCAATGATGGAGTACCA 8605940 >seq2122 Length=1387681 Score = 82.4 bits (90), Expect = 9e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 18657 CATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTC 18716 ||| ||||| | | | ||||| || || |||| ||| |||||||| |||||||| ||||| Sbjct 1084838 CATAACTCCAAATCTCTGATACTCTGCTACTCGTTTCTCAAAGAAGTTAGTTTTCCCCTC 1084779 Query 18717 TAATGATATACATTCCATAAAATCAAATGGATT 18749 |||||| || | ||||| || || |||||||| Sbjct 1084778 TAATGAAATGGACTCCATGAAGTCGAATGGATT 1084746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562082043621120