Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_016072.1
Length=1259197
Score E
Sequences producing significant alignments: (Bits) Value
seq3265 154 1e-31
seq10 125 6e-23
seq2267 109 4e-18
seq1563 95.1 1e-13
>seq3265
Length=3892940
Score = 154 bits (170), Expect = 1e-31
Identities = 391/587 (67%), Gaps = 16/587 (3%)
Strand=Plus/Plus
Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054
|| || || ||| | || ||||| ||| |||||||| |||| || |||| |||||
Sbjct 1639901 ATTGGCATCGATCTGGGCACCACCTATTCCTGTGTTGGGGTTTTCCAGCATGGCAAAGTG 1639960
Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114
|| || || ||||| || || || ||||| || ||||| ||||| | || || ||
Sbjct 1639961 GAGATCATCGCCAACGACCAGGGCAACAGGACCACTCCCAGCTATGTGGCCTTTACTGAC 1640020
Query 550115 ACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAA 550170
|| || | ||| |||| ||||| || || | || | ||| || || || |||||
Sbjct 1640021 ACAGAGAGGCTTA-TTGGAGATGCTGCCAAGAACCAGGTTGCCA-TG--AACCCCACCAA 1640076
Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230
|| | ||||| || ||||| | |||||||||| |||||||| | ||| ||| |
Sbjct 1640077 CACAGTCTTTGACGCCAAACGACTCATTGGAAGAAAGTTTAATGACCCTGTTGTCCAGTC 1640136
Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290
|| ||||| | ||||||||| | | | |||| | ||||| || | || | |
Sbjct 1640137 CGACATGAAACTGTGGCCTTTCAAGGTGATCAATGATAACGGAAAGCCCAAAGTTCAGGT 1640196
Query 550291 TACTCATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTATGGTTT 550346
|| |||| || | ||| |||| ||||| |||| || || |||||
Sbjct 1640197 GGAGTATAAAGG---TGAGAC-CAAGGCCTTTTACCCAGAGGAAATCTCGTCCATGGTCC 1640252
Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406
| | |||||||| | | ||| || | | || || || | ||||||| |
Sbjct 1640253 TGGTTAAAATGAAGGAGATAGCTGAGGCCTACCTGGGACAGAGGGTGTCAAATGCAGTCA 1640312
Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466
| || || ||||| ||||| || ||||| ||| | ||||| || || ||||| ||| |
Sbjct 1640313 TCACAGTGCCAGCTTATTTCAACGACTCTCAAAGGCAAGCCACAAAGGATGCAGGAGTCA 1640372
Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526
|| ||||||| ||||| || | || |||||||| || || || || || |||| ||||
Sbjct 1640373 TTTCTGGACTGAATGTCCTGAGGATCATCAATGAGCCCACAGCAGCAGCCATTGCCTATG 1640432
Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573
| || ||||| ||| ||| | ||||| ||||||||||||
Sbjct 1640433 GCCTGGATAAGGGTAAAAGAGGAGAGCGCAATGTGCTCATCTTTGAT 1640479
Score = 134 bits (148), Expect = 1e-25
Identities = 435/673 (65%), Gaps = 2/673 (0%)
Strand=Plus/Plus
Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972
|| ||||| || ||||| || | | || || ||| | || || | | ||||| |
Sbjct 1640675 ACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCTAGCACCCAGGCTAGCATTGAGATT 1640734
Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032
|| || ||||||| || ||||||| | || | || | || || ||||| ||
Sbjct 1640735 GACTCTCTATTTGAAGGCATTGATTTCTACACCTCCATCACAAGAGCACGCTTTGAGGAA 1640794
Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092
| || || ||||| || |||| | || ||||| || ||| | |||| |
Sbjct 1640795 CTCAACTCAGAGCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAAGCCCTGCAAGATGCC 1640854
Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152
||| | ||||| |||| | |||||||| || || |||||||| || |||||||||||
Sbjct 1640855 AAGCTGGATAAGGCCAAGATCCATGAAATCGTCCTGGTTGGTGGCTCCACAAGAATTCCC 1640914
Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211
||||| | | | || || || ||| ||||| | | | || | || | ||
Sbjct 1640915 AAAATCCAGAAGCTCTTGCAGGATTTCTTT-AATGGCAGGGATCTGAACAAGAGCATCAA 1640973
Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271
|||||||| ||||| ||||| ||||| ||| |||| || ||||| || || | ||
Sbjct 1640974 CCCAGATGAAGCTGTGGCCTACGGTGCAGCAGTTCAGGCTGCTATCCTCATGGGTGACAC 1641033
Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331
| || || | ||| || | | || | || || |||| || ||||| || | ||
Sbjct 1641034 TTCAGAGAATGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGCATTGA 1641093
Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391
|| | || || ||||||| ||| ||| | | || ||||| || || || |
Sbjct 1641094 GACCGCAGGTGGAGTTATGACACCTCTAATCAAACGCAACACTACCATCCCCACCAAGCA 1641153
Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451
| | | | || || || || ||||||||||| | | ||| ||||| | | |||
Sbjct 1641154 AACCCAGATCTTCTCCACATACTCAGATAATCAGCCAGGTGTGCTGATTCAGGTGTATGA 1641213
Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTAT 552511
|| || ||| | || || || || || | || || | ||| | | ||||||
Sbjct 1641214 GGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAATTTGAGCTCACAGGTAT 1641273
Query 552512 TCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571
||||||||||| || || || || || | || || ||||| || || || ||||| ||
Sbjct 1641274 CCCTCCTGCTCCCCGAGGTGTGCCACAGGTGGAGGTAACTTTTGACATTGACGCCAACGG 1641333
Query 552572 AATTTTGAATGTG 552584
||| ||||||||
Sbjct 1641334 CATTCTGAATGTG 1641346
>seq10
Length=14175190
Score = 125 bits (138), Expect = 6e-23
Identities = 116/147 (79%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450
|| ||| ||||||| || || || || || || || |||||||| || ||||| || ||
Sbjct 9605493 GTCACGAATGCAGTTATTACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACC 9605552
Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510
|||||||||||| |||||||| |||||||| || || || |||||||| || ||||||
Sbjct 9605553 AAAGATGCTGGAGCCATTGCTGGGCTTAATGTGCTGCGCATCATCAATGAGCCCACTGCT 9605612
Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537
||||| |||| ||||| || || |||
Sbjct 9605613 GCTGCCATTGCTTATGGCCTGGACAAA 9605639
>seq2267
Length=663809
Score = 109 bits (120), Expect = 4e-18
Identities = 108/140 (77%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || | |||||||| || || || |||||||| || || || || || ||||| |
Sbjct 515995 ATGCTGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGACG 516054
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
| || ||| |||| ||||||||||| ||||| |||||||| || |||||||||||
Sbjct 516055 CAGGGACCATTTCTGGGCTTAATGTTCTGCGTATCATCAATGAGCCGACTGCTGCTGCTA 516114
Query 550518 TTGCATATGGACTTGATAAA 550537
|||| ||||| || || |||
Sbjct 516115 TTGCTTATGGCCTGGACAAA 516134
>seq1563
Length=18910200
Score = 95.1 bits (104), Expect = 1e-13
Identities = 99/130 (76%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457
|||| || || || || || ||||| ||||||||||| ||||||||||| || || ||||
Sbjct 1042606 ATGCTGTTATCACAGTGCCTGCATACTTTAATGACTCTCAACGTCAAGCAACCAAGGATG 1042547
Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517
||||| |||| |||| || ||||| | | || || ||||| || ||||| || ||
Sbjct 1042546 CTGGAACTATTTCTGGTCTAAATGTGTTGAGAATCATTAATGAGCCCACTGCAGCAGCTA 1042487
Query 550518 TTGCATATGG 550527
| || |||||
Sbjct 1042486 TCGCTTATGG 1042477
Score = 95.1 bits (104), Expect = 1e-13
Identities = 112/152 (74%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
||||| ||| | || ||||| || ||||||||||| | ||| |||| ||||||||
Sbjct 1054754 GGTATTGATCTTGGCACCACCTACTCCTGTGTTGGTGTGTTCCAACATGGCAAAGTTGAG 1054813
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| ||||||||||||||||| ||||| || || || || || ||||||| || |||
Sbjct 1054814 ATCATTGCCAATGATCAAGGCAACAGGACCACACCCAGCTACGTGGCTTTCACAGATACT 1054873
Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA 550149
|| | |||| |||||||| || ||||
Sbjct 1054874 GAGAGGCTGATTGGAGATGCAGCCAAGAATCA 1054905
Score = 91.5 bits (100), Expect = 1e-12
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057
||||| ||| | || ||||| || ||||||||||| | ||| |||| ||||||||
Sbjct 1043300 GGTATTGATCTTGGCACCACCTACTCCTGTGTTGGTGTGTTCCAACATGGCAAAGTTGAG 1043241
Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117
|| ||||||||||||||||| ||||| || || || || || ||||||| || |||
Sbjct 1043240 ATCATTGCCAATGATCAAGGCAACAGGACCACACCCAGCTACGTGGCTTTCACAGATACT 1043181
Query 550118 GAACATTTAGTTGGTGATGCAGC 550140
|| | |||| ||||||||
Sbjct 1043180 GAGAGGCTGATTGGAGATGCAGC 1043158
Score = 87.8 bits (96), Expect = 1e-11
Identities = 89/116 (77%), Gaps = 0/116 (0%)
Strand=Plus/Plus
Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459
|| || || || || || || || || |||||||| || ||||| |||||||| ||||||
Sbjct 1055585 GCTGTCATCACAGTGCCTGCCTACTTCAATGACTCCCAGCGTCAGGCTACTAAGGATGCT 1055644
Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515
|| || |||| || || ||| | ||||| ||||||||||| || ||||||||
Sbjct 1055645 GGCACAATCTCTGGCCTCAACGTTTTGCGTATCATCAATGAACCAACCGCTGCTGC 1055700
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 4029094615785920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |