Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq3265 154 1e-31 seq10 125 6e-23 seq2267 109 4e-18 seq1563 95.1 1e-13 >seq3265 Length=3892940 Score = 154 bits (170), Expect = 1e-31 Identities = 391/587 (67%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 549995 ATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTT 550054 || || || ||| | || ||||| ||| |||||||| |||| || |||| ||||| Sbjct 1639901 ATTGGCATCGATCTGGGCACCACCTATTCCTGTGTTGGGGTTTTCCAGCATGGCAAAGTG 1639960 Query 550055 GAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAA 550114 || || || ||||| || || || ||||| || ||||| ||||| | || || || Sbjct 1639961 GAGATCATCGCCAACGACCAGGGCAACAGGACCACTCCCAGCTATGTGGCCTTTACTGAC 1640020 Query 550115 ACTGA-ACATTTAGTTGGTGATGCAGCAAAATATCAAG---CCACTGGTAATCCTACCAA 550170 || || | ||| |||| ||||| || || | || | ||| || || || ||||| Sbjct 1640021 ACAGAGAGGCTTA-TTGGAGATGCTGCCAAGAACCAGGTTGCCA-TG--AACCCCACCAA 1640076 Query 550171 TACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGC 550230 || | ||||| || ||||| | |||||||||| |||||||| | ||| ||| | Sbjct 1640077 CACAGTCTTTGACGCCAAACGACTCATTGGAAGAAAGTTTAATGACCCTGTTGTCCAGTC 1640136 Query 550231 AGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAGC 550290 || ||||| | ||||||||| | | | |||| | ||||| || | || | | Sbjct 1640137 CGACATGAAACTGTGGCCTTTCAAGGTGATCAATGATAACGGAAAGCCCAAAGTTCAGGT 1640196 Query 550291 TACTCATGAAGGATCTGTTAAACAA----TTTTCACCAGAACAAATTTCATCTATGGTTT 550346 || |||| || | ||| |||| ||||| |||| || || ||||| Sbjct 1640197 GGAGTATAAAGG---TGAGAC-CAAGGCCTTTTACCCAGAGGAAATCTCGTCCATGGTCC 1640252 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 | | |||||||| | | ||| || | | || || || | ||||||| | Sbjct 1640253 TGGTTAAAATGAAGGAGATAGCTGAGGCCTACCTGGGACAGAGGGTGTCAAATGCAGTCA 1640312 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | || || ||||| ||||| || ||||| ||| | ||||| || || ||||| ||| | Sbjct 1640313 TCACAGTGCCAGCTTATTTCAACGACTCTCAAAGGCAAGCCACAAAGGATGCAGGAGTCA 1640372 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 || ||||||| ||||| || | || |||||||| || || || || || |||| |||| Sbjct 1640373 TTTCTGGACTGAATGTCCTGAGGATCATCAATGAGCCCACAGCAGCAGCCATTGCCTATG 1640432 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGAT 550573 | || ||||| ||| ||| | ||||| |||||||||||| Sbjct 1640433 GCCTGGATAAGGGTAAAAGAGGAGAGCGCAATGTGCTCATCTTTGAT 1640479 Score = 134 bits (148), Expect = 1e-25 Identities = 435/673 (65%), Gaps = 2/673 (0%) Strand=Plus/Plus Query 551913 ACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCACTATTGAAGTA 551972 || ||||| || ||||| || | | || || ||| | || || | | ||||| | Sbjct 1640675 ACAGCTTGTGAGAGAGCGAAGAGGACCCTGTCCTCTAGCACCCAGGCTAGCATTGAGATT 1640734 Query 551973 GATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAAATTTGAAGAT 552032 || || ||||||| || ||||||| | || | || | || || ||||| || Sbjct 1640735 GACTCTCTATTTGAAGGCATTGATTTCTACACCTCCATCACAAGAGCACGCTTTGAGGAA 1640794 Query 552033 ATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTTAAGAGATTCA 552092 | || || ||||| || |||| | || ||||| || ||| | |||| | Sbjct 1640795 CTCAACTCAGAGCTCTTCAGGGGAACACTGGAGCCAGTTGAGAAAGCCCTGCAAGATGCC 1640854 Query 552093 AAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCT 552152 ||| | ||||| |||| | |||||||| || || |||||||| || ||||||||||| Sbjct 1640855 AAGCTGGATAAGGCCAAGATCCATGAAATCGTCCTGGTTGGTGGCTCCACAAGAATTCCC 1640914 Query 552153 AAAATTCGCGAAATGTTA-AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAA 552211 ||||| | | | || || || ||| ||||| | | | || | || | || Sbjct 1640915 AAAATCCAGAAGCTCTTGCAGGATTTCTTT-AATGGCAGGGATCTGAACAAGAGCATCAA 1640973 Query 552212 TCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAAC 552271 |||||||| ||||| ||||| ||||| ||| |||| || ||||| || || | || Sbjct 1640974 CCCAGATGAAGCTGTGGCCTACGGTGCAGCAGTTCAGGCTGCTATCCTCATGGGTGACAC 1641033 Query 552272 TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGA 552331 | || || | ||| || | | || | || || |||| || ||||| || | || Sbjct 1641034 TTCAGAGAATGTCCAAGATCTGCTGCTGCTGGACGTGGCTCCCCTGTCTCTGGGCATTGA 1641093 Query 552332 AACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAA 552391 || | || || ||||||| ||| ||| | | || ||||| || || || | Sbjct 1641094 GACCGCAGGTGGAGTTATGACACCTCTAATCAAACGCAACACTACCATCCCCACCAAGCA 1641153 Query 552392 ATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGA 552451 | | | | || || || || ||||||||||| | | ||| ||||| | | ||| Sbjct 1641154 AACCCAGATCTTCTCCACATACTCAGATAATCAGCCAGGTGTGCTGATTCAGGTGTATGA 1641213 Query 552452 AGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTAT 552511 || || ||| | || || || || || | || || | ||| | | |||||| Sbjct 1641214 GGGTGAGAGAGCCATGACCAAGGACAACAACCTCCTGGGCAAATTTGAGCTCACAGGTAT 1641273 Query 552512 TCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGG 552571 ||||||||||| || || || || || | || || ||||| || || || ||||| || Sbjct 1641274 CCCTCCTGCTCCCCGAGGTGTGCCACAGGTGGAGGTAACTTTTGACATTGACGCCAACGG 1641333 Query 552572 AATTTTGAATGTG 552584 ||| |||||||| Sbjct 1641334 CATTCTGAATGTG 1641346 >seq10 Length=14175190 Score = 125 bits (138), Expect = 6e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || ||| ||||||| || || || || || || || |||||||| || ||||| || || Sbjct 9605493 GTCACGAATGCAGTTATTACAGTTCCTGCTTACTTCAATGACTCCCAGCGTCAGGCCACC 9605552 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 |||||||||||| |||||||| |||||||| || || || |||||||| || |||||| Sbjct 9605553 AAAGATGCTGGAGCCATTGCTGGGCTTAATGTGCTGCGCATCATCAATGAGCCCACTGCT 9605612 Query 550511 GCTGCACTTGCATATGGACTTGATAAA 550537 ||||| |||| ||||| || || ||| Sbjct 9605613 GCTGCCATTGCTTATGGCCTGGACAAA 9605639 >seq2267 Length=663809 Score = 109 bits (120), Expect = 4e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || | |||||||| || || || |||||||| || || || || || ||||| | Sbjct 515995 ATGCTGTGGTGACTGTACCTGCCTACTTCAATGACTCTCAGCGCCAGGCCACCAAAGACG 516054 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 | || ||| |||| ||||||||||| ||||| |||||||| || ||||||||||| Sbjct 516055 CAGGGACCATTTCTGGGCTTAATGTTCTGCGTATCATCAATGAGCCGACTGCTGCTGCTA 516114 Query 550518 TTGCATATGGACTTGATAAA 550537 |||| ||||| || || ||| Sbjct 516115 TTGCTTATGGCCTGGACAAA 516134 >seq1563 Length=18910200 Score = 95.1 bits (104), Expect = 1e-13 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 550398 ATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATG 550457 |||| || || || || || ||||| ||||||||||| ||||||||||| || || |||| Sbjct 1042606 ATGCTGTTATCACAGTGCCTGCATACTTTAATGACTCTCAACGTCAAGCAACCAAGGATG 1042547 Query 550458 CTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCAC 550517 ||||| |||| |||| || ||||| | | || || ||||| || ||||| || || Sbjct 1042546 CTGGAACTATTTCTGGTCTAAATGTGTTGAGAATCATTAATGAGCCCACTGCAGCAGCTA 1042487 Query 550518 TTGCATATGG 550527 | || ||||| Sbjct 1042486 TCGCTTATGG 1042477 Score = 95.1 bits (104), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || ||||| || ||||||||||| | ||| |||| |||||||| Sbjct 1054754 GGTATTGATCTTGGCACCACCTACTCCTGTGTTGGTGTGTTCCAACATGGCAAAGTTGAG 1054813 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||||||||| ||||| || || || || || ||||||| || ||| Sbjct 1054814 ATCATTGCCAATGATCAAGGCAACAGGACCACACCCAGCTACGTGGCTTTCACAGATACT 1054873 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCA 550149 || | |||| |||||||| || |||| Sbjct 1054874 GAGAGGCTGATTGGAGATGCAGCCAAGAATCA 1054905 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 ||||| ||| | || ||||| || ||||||||||| | ||| |||| |||||||| Sbjct 1043300 GGTATTGATCTTGGCACCACCTACTCCTGTGTTGGTGTGTTCCAACATGGCAAAGTTGAG 1043241 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || ||||||||||||||||| ||||| || || || || || ||||||| || ||| Sbjct 1043240 ATCATTGCCAATGATCAAGGCAACAGGACCACACCCAGCTACGTGGCTTTCACAGATACT 1043181 Query 550118 GAACATTTAGTTGGTGATGCAGC 550140 || | |||| |||||||| Sbjct 1043180 GAGAGGCTGATTGGAGATGCAGC 1043158 Score = 87.8 bits (96), Expect = 1e-11 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 550400 GCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCT 550459 || || || || || || || || || |||||||| || ||||| |||||||| |||||| Sbjct 1055585 GCTGTCATCACAGTGCCTGCCTACTTCAATGACTCCCAGCGTCAGGCTACTAAGGATGCT 1055644 Query 550460 GGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 || || |||| || || ||| | ||||| ||||||||||| || |||||||| Sbjct 1055645 GGCACAATCTCTGGCCTCAACGTTTTGCGTATCATCAATGAACCAACCGCTGCTGC 1055700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029094615785920