Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2387 269 5e-67 seq963 129 1e-24 seq375 129 1e-24 seq52 129 1e-24 seq2122 96.9 6e-15 >seq2387 Length=643009 Score = 269 bits (298), Expect = 5e-67 Identities = 934/1439 (65%), Gaps = 40/1439 (3%) Strand=Plus/Minus Query 221419 CAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGA 221478 |||||| |||| ||||||||||||||||||| |||| || || ||||||| | Sbjct 87747 CAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTGAGCCTCGGCACT 87688 Query 221479 AGTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGAT 221538 ||||| ||||| || ||| | || |||| ||||| || ||||| || || Sbjct 87687 TTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGATTCCTAT 87628 Query 221539 GGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGAT 221598 |||||||| | | ||||||| | ||||| ||||| ||||| |||| | ||| || Sbjct 87627 TGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAGTAGTTAATGTCTAT 87568 Query 221599 CAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAA 221658 | ||||| ||||| ||| ||||| ||| | | |||||| | | | || Sbjct 87567 GATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACATACGCCAGCTTTTTAA-AGTCAA 87509 Query 221659 CACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAG 221718 || || ||| ||| || || | | | || || || | | |||||| Sbjct 87508 ----AAGTC--------CGTTCAGGTGTGACATACATG--TTGAGAGCGATGGAGGCCAG 87463 Query 221719 GTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCT 221778 ||||| || || ||||| |||| | |||| || | | ||| ||||| ||||||||||| Sbjct 87462 ATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCT 87403 Query 221779 GCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAG 221838 ||| |||||||| ||||||| | || || ||| | ||| ||||| ||||| || Sbjct 87402 GCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAG 87343 Query 221839 CATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTG-G 221897 ||| | || || || || ||| | | | | ||| || ||| || | ||| | Sbjct 87342 CATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACCACAGCTG-CTGAG 87284 Query 221898 CGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGTCAA 221957 | ||||| | |||||| ||||| ||| || || ||| |||||| || | Sbjct 87283 CCTTCACCACTCGCTTGACCCTCCCCTC---CTTCTCGTATTTGGTGTAGAGCTCCTCGA 87227 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || || | ||||||||| || || ||| | ||||||||||| ||||| Sbjct 87226 ACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGGGACCAGT 87167 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 | |||| | ||||||| |||||| | ||| ||||||||||| || | || |||| Sbjct 87166 CTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAGAAAAGAT 87107 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 |||||| | ||||||||| || |||| ||| |||| |||| || || |||| || Sbjct 87106 CTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGTCGAAAACGT 87047 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 || |||||| |||||||| || | ||| | || ||||||| ||||||||||||||| | Sbjct 87046 CAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGCCACCCTGGT 86987 Query 222198 CCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGAC 222257 | || | || |||| | | | || | || ||||| |||||||| | Sbjct 86986 CGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGTTGGAATTGC 86927 Query 222258 CGTTGGTGCCCTTAATGTA-CGCACCGCCGGCCCTCAGGTTACTGGCAGACATGCCGATA 222316 | ||||| || |||||| | | ||| | | || | | ||| | | || |||||| Sbjct 86926 CATTGGTTCCGGCAATGTAGCTCCCCGTC-GATCTGATGCAGCTGACCGCCACGCCGATT 86868 Query 222317 CCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATA 222376 || ||||| ||| ||||| | |||||| ||| || ||||| ||||| || || Sbjct 86867 CCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATAAATGCCTTCGATG 86808 Query 222377 GAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCG 222436 ||| ||||| | | ||||| || || |||| ||| | || ||| | || Sbjct 86807 CTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCTGTTGGTTCCAGCA 86748 Query 222437 TTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCT 222496 || || || || ||| |||||| || || | | || | ||| | ||| ||||| Sbjct 86747 TTGAAGAGTGTAGGAGAGGCGTGGGTGAACCACTTCTCTGAGAGCAGGTTGTAGGTCTCG 86688 Query 222497 ACGACTCTGGCGATGT-TGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTG 222555 | | | |||| | ||| | ||| || | || |||||| ||||| ||| Sbjct 86687 ATGGCCGCCTCGATATCTGT-TCTGTGGATGCCGACAGCCACTCTCATTAGCATGTGCTG 86629 Query 222556 GGGCCTCT---CCACAGGACCCTTGGAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTT 222612 |||| || |||| | ||| | | | |||||| || | ||||||||||| Sbjct 86628 AGGCCGCTCGGCCACTTTA---TTGTTGATCTTCAACAGGTAGGACCTCTCCAGAGTCTT 86572 Query 222613 GAACCCAAAGTAGTTG-AGGTCAAAGTCTCTGCCGTGAACCACGGCGGCGTCCAGCTCCG 222671 ||| |||||| ||||| ||| ||| |||||| || || | ||| | || || | | Sbjct 86571 GAAGCCAAAGAAGTTGTAGGAGAAA-TCTCTGTCGAAAATGATGGCTGAGTTGAG-GCGG 86514 Query 222672 AC-TTGTGCTTTACGCTCAACTCGAAAAAGCGCTC---AGACACGAGGGGAGCGTTCTCT 222727 | |||| || | | | || || | ||| || | | ||| | || | Sbjct 86513 TCTTTGTTCTCGAGGACGATGTC---AAGGGTCTCCTTGGAGATCATGGGGGAGTGGCGT 86457 Query 222728 TTGGTGTCGGGGTTAACGTTGTGGTACAGCTGCCACATGGCATCAGAGAACGTGTCGGGA 222787 ||| | ||||| |||| || |||||| | | |||| ||||| |||| | Sbjct 86456 TTGTTCAGAGGGTTGACGTAGTTGTACAGGTCCTCCATGACATCACTGAACACTTTCTTT 86397 Query 222788 GTCTGCTTGTGCAGATTCGACACGGCGATCCGAGACGCCAAGATACCATAGTCAGGGTG 222846 |||| |||||||| || || ||||||||||| | || | ||| ||||||| ||||| Sbjct 86396 GTCTCTTTGTGCAGGTTGGAGACGGCGATCCGGGCGGCGAGGATGGCATAGTCTGGGTG 86338 Score = 100 bits (110), Expect = 5e-16 Identities = 132/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| || || |||||| || | |||| || || ||||| | Sbjct 88092 CATCTCCTCACTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTCACGAT 88033 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| ||||| ||||| ||||| | ||| | ||| ||| | | |||||| Sbjct 88032 CTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCGATGGA 87973 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||||||||||||||||||||| || ||| ||| |||||||| || |||| |||||| || Sbjct 87972 CTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGCAGGCT 87913 Query 221245 GTT 221247 ||| Sbjct 87912 GTT 87910 >seq963 Length=229635 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| |||||||| || Sbjct 212566 GGAGAGCGTGTGGTGGCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 212625 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || ||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 212626 GCGATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 212685 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 212686 ATCAGCAGAGACGAGG 212701 >seq375 Length=30079 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| |||||||| || Sbjct 25810 GGAGAGCGTGTGGTGGCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 25751 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || ||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 25750 GCGATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 25691 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 25690 ATCAGCAGAGACGAGG 25675 >seq52 Length=1057507 Score = 129 bits (142), Expect = 1e-24 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| |||| |||||||| ||||||||||| ||||| ||| |||||||| || Sbjct 14081 GGAGAGCGTGTGGTGGCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCT 14022 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 || ||||||||||| ||| ||| || |||||||| ||| ||| |||||||||||| Sbjct 14021 GCGATCTTCTGGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTC 13962 Query 25993 ATCAGCAGGGACGAGG 26008 |||||||| ||||||| Sbjct 13961 ATCAGCAGAGACGAGG 13946 >seq2122 Length=1387681 Score = 96.9 bits (106), Expect = 6e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 25873 GGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCG 25932 || ||||| | || || ||||| ||||||||||| ||||| ||| || || || || Sbjct 1083497 GGGGAGCGAATTGTGGCTTTTGCAGCTGTGGAGGGAATCTTCTTCTCTGGCTCATTCGCT 1083556 Query 25933 GCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTC 25992 ||||||| ||||||||| ||| || ||||||||||| || |||||| ||||| Sbjct 1083557 GCCATCTATTGGCTCAAGAAGAGAGGCCTAATGCCCGGGCTTACCTATTCCAATGAGCTG 1083616 Query 25993 ATCAGCAGGGACGAGG 26008 ||||| ||||| |||| Sbjct 1083617 ATCAGTAGGGATGAGG 1083632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928800586987520