Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq10 212 7e-50
>seq10
Length=14175190
Score = 212 bits (234), Expect = 7e-50
Identities = 580/871 (67%), Gaps = 22/871 (3%)
Strand=Plus/Plus
Query 160098 TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGAC 160157
|| || |||||||| || || || || | || |||| |||||| | ||| ||||
Sbjct 382272 TCAAACTTATTTGCAAAGAGGTGTTGCTGGCTC---AGGAGCCAGTGGAGGTCACCGGCT 382328
Query 160158 CCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTC 160217
|| |||| ||||| | || ||| || ||||||| | || | ||||| ||
Sbjct 382329 CCATACACACAGACAGCCCGCCTGTAAGAACCAGTGCAAGGTGAATAGGGGGCTCCATTT 382388
Query 160218 GCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAG 160277
||| |||||| | | || |||||| || | || || | ||||||||||| ||
Sbjct 382389 TTCACATCACCTGCTAAATAGCTCCACTTAACCACCCGAGCGAAGGCCTGCATGTCTGAT 382448
Query 160278 GTGTCGTATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336
|| || ||| || | | ||| || | || ||||| |||||| | ||| || ||
Sbjct 382449 ACATCATACTTG-ACGTTGGCGGGCACTGACCCAGGAACAGAGGGCATCCTCTGCAGAGT 382507
Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396
|||||||| ||| |||||||||||||| |||||||| ||| |||| || | || ||
Sbjct 382508 GGCCCACAAGTGCTCGTCGGGGCTGTATGTGTCCTTCTCCCACTCCAGGAGTT-TCTGAA 382566
Query 160397 TAAC-CTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGC 160455
| |||||| || ||||| | || | | ||| || || |||||||| || | |
Sbjct 382567 CCTCTCTGTCCGTCATCACGTGTTTCACAAATGCTCTCGTGACCACAAAGTAGGCATTCC 382626
Query 160456 CGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCA 160515
| ||||| || || || || || || | | |||| |||| || ||| | | |
Sbjct 382627 CCGAGAACATGGGGCTGCTGATTGGTGGGGGG-CTTT-TCCTCACATTTGTCCGG-ATGA 382683
Query 160516 CTCCTTTCACCAGCGC-GTGTCGCTTCTTCCACCTGACCATCTTGT-GCGGTGGCATGCG 160573
| | | || || ||| | | || ||| | | | |||||| || || | ||
Sbjct 382684 CAC-TGTCGGTGACGTTGTGGTGATACTGCCAGCGGCCTTTCTTGTAGCTGTTGGTGGCC 382742
Query 160574 TTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTT 160633
| | ||||| | ||||| |||| || | ||||| ||| || ||||| ||
Sbjct 382743 T-CGGTCTCCATGCTGTTTCTCCCGTTTAGGGCCTTCAGTGTCTTAACCATCTCCCCATT 382801
Query 160634 CGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAG 160693
|| |||| || ||||| || || || ||| | || |||| |||| | |
Sbjct 382802 GGTTTTGATGGGGAAGTCTGTCCCACAGGTGTTGAGCAGGTACCTCCACCGGACATGCGA 382861
Query 160694 GTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACAC 160753
|| | |||| || ||||||| || | ||||||||| || ||| ||| || ||||||||
Sbjct 382862 GTTGAGCAGATCTTTCATGCAGTTCAGATCTGCCTGTACTCGGGACCACGAGGCGTACAC 382921
Query 160754 TACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCAC 160813
|| | || | |||| |||| | ||| || || ||||| ||||| || || ||||
Sbjct 382922 CACCCTTTCCAATTTAGTGGCTATAAACACATTGGGAAAACATGACACAATAGCCTCCAC 382981
Query 160814 CGCCA---GAAAGAACATCTTATCCGC-CTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869
||| ||||| |||| | | |||| |||||||||||||||| || | |||||
Sbjct 382982 GGCCTTCTGAAAG----TCTTTTGTGGACTTTTGGTCCACGTGCACGCAGTAGATGTTCT 383037
Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929
|||| ||||| | || | || | | ||| |||||||| ||||| | ||||||||| |
Sbjct 383038 GAGGAGCGTAAACAGCTCGTAGAAGTCGCTCAAACATCTCAATCTTCTCATGGATCACCA 383097
Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960
| ||||||||||| ||||| || |||||||
Sbjct 383098 TGGAGTAGGCTATGGGAAAGTCTCTCTCCTC 383128
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577191724366080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |