Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq10 212 7e-50 >seq10 Length=14175190 Score = 212 bits (234), Expect = 7e-50 Identities = 580/871 (67%), Gaps = 22/871 (3%) Strand=Plus/Plus Query 160098 TCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGAC 160157 || || |||||||| || || || || | || |||| |||||| | ||| |||| Sbjct 382272 TCAAACTTATTTGCAAAGAGGTGTTGCTGGCTC---AGGAGCCAGTGGAGGTCACCGGCT 382328 Query 160158 CCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTC 160217 || |||| ||||| | || ||| || ||||||| | || | ||||| || Sbjct 382329 CCATACACACAGACAGCCCGCCTGTAAGAACCAGTGCAAGGTGAATAGGGGGCTCCATTT 382388 Query 160218 GCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAG 160277 ||| |||||| | | || |||||| || | || || | ||||||||||| || Sbjct 382389 TTCACATCACCTGCTAAATAGCTCCACTTAACCACCCGAGCGAAGGCCTGCATGTCTGAT 382448 Query 160278 GTGTCGTATTTGTACATCAG-GGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGT 160336 || || ||| || | | ||| || | || ||||| |||||| | ||| || || Sbjct 382449 ACATCATACTTG-ACGTTGGCGGGCACTGACCCAGGAACAGAGGGCATCCTCTGCAGAGT 382507 Query 160337 GGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGAT 160396 |||||||| ||| |||||||||||||| |||||||| ||| |||| || | || || Sbjct 382508 GGCCCACAAGTGCTCGTCGGGGCTGTATGTGTCCTTCTCCCACTCCAGGAGTT-TCTGAA 382566 Query 160397 TAAC-CTGTCCCGCAGAACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGC 160455 | |||||| || ||||| | || | | ||| || || |||||||| || | | Sbjct 382567 CCTCTCTGTCCGTCATCACGTGTTTCACAAATGCTCTCGTGACCACAAAGTAGGCATTCC 382626 Query 160456 CGGAGAATATCGGTATGGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCA 160515 | ||||| || || || || || || | | |||| |||| || ||| | | | Sbjct 382627 CCGAGAACATGGGGCTGCTGATTGGTGGGGGG-CTTT-TCCTCACATTTGTCCGG-ATGA 382683 Query 160516 CTCCTTTCACCAGCGC-GTGTCGCTTCTTCCACCTGACCATCTTGT-GCGGTGGCATGCG 160573 | | | || || ||| | | || ||| | | | |||||| || || | || Sbjct 382684 CAC-TGTCGGTGACGTTGTGGTGATACTGCCAGCGGCCTTTCTTGTAGCTGTTGGTGGCC 382742 Query 160574 TTCCGTCTCTAGACTGTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTT 160633 | | ||||| | ||||| |||| || | ||||| ||| || ||||| || Sbjct 382743 T-CGGTCTCCATGCTGTTTCTCCCGTTTAGGGCCTTCAGTGTCTTAACCATCTCCCCATT 382801 Query 160634 CGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAG 160693 || |||| || ||||| || || || ||| | || |||| |||| | | Sbjct 382802 GGTTTTGATGGGGAAGTCTGTCCCACAGGTGTTGAGCAGGTACCTCCACCGGACATGCGA 382861 Query 160694 GTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACAC 160753 || | |||| || ||||||| || | ||||||||| || ||| ||| || |||||||| Sbjct 382862 GTTGAGCAGATCTTTCATGCAGTTCAGATCTGCCTGTACTCGGGACCACGAGGCGTACAC 382921 Query 160754 TACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCAC 160813 || | || | |||| |||| | ||| || || ||||| ||||| || || |||| Sbjct 382922 CACCCTTTCCAATTTAGTGGCTATAAACACATTGGGAAAACATGACACAATAGCCTCCAC 382981 Query 160814 CGCCA---GAAAGAACATCTTATCCGC-CTTTCGGTCCACGTGCACGCAATACAGGTTCT 160869 ||| ||||| |||| | | |||| |||||||||||||||| || | ||||| Sbjct 382982 GGCCTTCTGAAAG----TCTTTTGTGGACTTTTGGTCCACGTGCACGCAGTAGATGTTCT 383037 Query 160870 GAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGA 160929 |||| ||||| | || | || | | ||| |||||||| ||||| | ||||||||| | Sbjct 383038 GAGGAGCGTAAACAGCTCGTAGAAGTCGCTCAAACATCTCAATCTTCTCATGGATCACCA 383097 Query 160930 TAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 | ||||||||||| ||||| || ||||||| Sbjct 383098 TGGAGTAGGCTATGGGAAAGTCTCTCTCCTC 383128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577191724366080