Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq2387 212 7e-50 seq1563 109 7e-19 >seq2387 Length=643009 Score = 212 bits (234), Expect = 7e-50 Identities = 908/1407 (65%), Gaps = 60/1407 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| | ||| | || || ||||||||||| | ||| || || | | | Sbjct 86626 CCTCAGCACATGCTAATGAGAGTGGCTGTCGGCATCCACAGAACAGATATCGAGGCGGCC 86685 Query 75272 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | ||||| ||| || | | || | | || ||||| ||||| | || || ||||| Sbjct 86686 ATCGAGACCTACAACCTGCTCTCAGAGAAGTG-GTTCACCCACGCCTCTCCTACACTCTT 86744 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||||||||| || || || ||| ||||||| |||||||| |||||| ||||| || Sbjct 86745 CAATGCTGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGA 86804 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 | ||| | || || |||| || || | | |||| || | ||||| || | ||| || Sbjct 86805 CAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCGGCCGG 86864 Query 75451 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCA-ATAAATCTCGTATTCGGGGGAC 75507 || || || || || | || | ||| | | | || ||| || || Sbjct 86865 AGGAATCGGCGTGGCGGTC--AGCTGCATCAGATCGACGGGGAGCT-ACATTGCCGGAAC 86921 Query 75508 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 75567 ||||| | || | || | | || ||||| | || | ||| ||| || || || Sbjct 86922 CAATGGCAATTCCAACGGGCTGGTCCCCATGCTGAGAGTTTACAACAACACGGCCCGTTA 86981 Query 75568 TGTAAATCAAGCGGGGCGTCGCAAG----GGGTCCATCGCGGTCTACTTGGAACCATGGC 75623 || | | || | ||| | || || || |||| | ||| |||| ||||||| Sbjct 86982 CGTCGA-CCAGGGTGGCAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCATGGC 87040 Query 75624 A---TGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAGAGGCT 75679 | || || | || || ||||| ||| | | || ||| ||| | || ||| Sbjct 87041 ACTTTGACGTTTTC---GACTTCCTGGAGCTGAAGA-AGAACACAGGGAAGGAGGAGCAA 87096 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 | |||||||| || | |||||||||| || ||| | ||||||||| |||| | Sbjct 87097 AGAGCCAGAGATCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGGGT---G 87153 Query 75740 GAGGGTGGTCAA---TGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGA-CGC 75795 ||| | ||| ||||| || | ||||| || || || || || ||| || Sbjct 87154 GAGAGCAACCAAGACTGGTCCCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTGC 87213 Query 75796 GGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGC 75855 | ||| |||||||| || | |||||||| || || || ||||||| || | ||| || Sbjct 87214 TG-GGGAGAGGAGTTCGAGGAGCTCTACACCAAATACGAGAAGGAGGGGAGGGTCAA-GC 87271 Query 75856 GACTGTACCAGCCGCCG-ATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAA 75914 || || || | | | | | ||| | || ||| || | || ||||| || || || | Sbjct 87272 GAGTGGTGAAGGCTCAGCAGCTGTGGTACGCCATTATCGAGTCCCAGACAGAAACCGGTA 87331 Query 75915 CACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAA 75974 ||||||| ||||| ||||| || || || |||| |||||| ||||| |||| |||| | Sbjct 87332 CACCATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCA 87391 Query 75975 CAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGG 76034 | ||||| || || || ||||| ||||| | || ||||| |||||||| | Sbjct 87392 CCATCAAATGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGAGGATGAGGTAG 87451 Query 76035 CTGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCA---ATGAAGAGACTCGCA 76091 | || || ||| |||| || ||||| || | |||||||| |||| || | Sbjct 87452 CGGTCTGTAATCTGGCCTCCATCGCTCTCAACATGTATGTCACACCTGAA------CGGA 87505 Query 76092 CTTTTGATTATGAAAAACT---TCATGAAATCACAAAGATTGTTACCAAAAATCTAAACC 76148 ||||||| | | |||| || ||| | || | || || |||||| || ||| Sbjct 87506 CTTTTGACTTTAAAAAGCTGGCGTATGTGACCAAAGTAATCGT---CAAAAACCTGAACA 87562 Query 76149 GAGTCATTGACAGAAATTTTTATCCCGT---TGAGACTGCGCGAAAGTCTAATATGCGAC 76205 |||| |||| || | ||||| || ||| | | | ||||| || | ||| | Sbjct 87563 AGATCATAGACATTAACTACTATCCGGTGCCTGAAGCAGAG---AAGTCCAACAAGCGCC 87619 Query 76206 ACAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACG 76265 |||| || || || | ||||| || ||| | || |||| || || || || ||| Sbjct 87620 ACAGGCCAATAGGAATCGGTGTGCAGGGTTTGGCTGATGCCTTCATCCTGATGCGTTACC 87679 Query 76266 CATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACG 76325 | ||||| | || || || | |||| | | |||||||| ||||| || ||| Sbjct 87680 CCTTTGAAAGTGCCGAGGCTCAGCTGCTGAACACCCAGATCTTTGAGACCATCTACTACG 87739 Query 76326 CATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGG 76385 | ||||||||||||| || || |||||| | | || |||| ||||||| | | Sbjct 87740 CCGCCCTGGAGGCGAGCTGCGAGCTGGCTGCCGAGCTCGGCCCCTACGAGACATACCAAG 87799 Query 76386 GTTCTCCCGCGTC--CCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCT 76443 | ||||| |||| | |||| | || |||| || ||||||| || || || | || Sbjct 87800 G--CTCCCCCGTCAGCAAAGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCA-CT 87855 Query 76444 CAAC--TACGACTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 76501 | | | |||||| | | || ||||| ||| | | || | | ||||| Sbjct 87856 GACCTGTGGGACTGGAAGCTCCTGAAGGAGAAGATCGCCAAACACGGAGTCAGGAACAGC 87915 Query 76502 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 76561 || || |||| || ||||| || ||||||||||| || ||| |||| || || || | | Sbjct 87916 CTGCTGCTGGCCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCC 87975 Query 76562 TTTGAACCATACACAACAAACATCTAC 76588 | || | ||||| | ||||||||| Sbjct 87976 ATCGAGGCCTACACCAGCAACATCTAC 88002 >seq1563 Length=18910200 Score = 109 bits (120), Expect = 7e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 75896 TCACAGACGGAGACTGGAACACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGT 75955 |||||||| || ||||| |||||||| ||||| |||||||| || ||||||| |||||| Sbjct 8605922 TCACAGACAGAAACTGGCACACCATACATGCTCTACAAGGACGCCTGTAACAGGAAGAGC 8605863 Query 75956 AACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTAC 76015 ||||| ||||| |||| || ||||| | ||||| ||||| || || |||||||| Sbjct 8605862 AACCAGCAGAATCTGGGCACCATCAAATCCAGCAATCTGTGCACAGAGATAGTAGAGTAC 8605803 Query 76016 ACA 76018 ||| Sbjct 8605802 ACA 8605800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596541203287040