Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq2494 143 2e-29 seq659 143 2e-29 >seq2494 Length=52301 Score = 143 bits (158), Expect = 2e-29 Identities = 135/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || ||||||||||| || ||||||| |||||| || | |||||| |||||| Sbjct 18420 AGATCAGTTTCAGGGTTGTCACACTCGGGACACAGCACAAATTTTCTGATGAACCCATCA 18479 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| ||||| | |||||||| |||||||||||| | || ||||||||| Sbjct 18480 AGCATGTCCTGCAACTTGTTCGCCTCGTGGGATCCGTTGACGATGTAACGGTCGTTTTTG 18539 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 ||| | ||| || || ||||| || || || || || |||| ||||||| Sbjct 18540 GTATCAAACTGGGTCTGAGCGCCGAGTTCACAACCAAAAAACTTGGTCGGGT 18591 >seq659 Length=23678 Score = 143 bits (158), Expect = 2e-29 Identities = 135/172 (78%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 || ||||| || ||||||||||| || ||||||| |||||| || | |||||| |||||| Sbjct 1588 AGATCAGTTTCAGGGTTGTCACACTCGGGACACAGCACAAATTTTCTGATGAACCCATCA 1529 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 |||| |||||| ||||| | |||||||| |||||||||||| | || ||||||||| Sbjct 1528 AGCATGTCCTGCAACTTGTTCGCCTCGTGGGATCCGTTGACGATGTAACGGTCGTTTTTG 1469 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGT 34486 ||| | ||| || || ||||| || || || || || |||| ||||||| Sbjct 1468 GTATCAAACTGGGTCTGAGCGCCGAGTTCACAACCAAAAAACTTGGTCGGGT 1417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412822440021344