Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq3265 262 3e-64 seq10 113 3e-19 seq2267 109 4e-18 seq1563 96.9 3e-14 seq1078 89.7 4e-12 >seq3265 Length=3892940 Score = 262 bits (290), Expect = 3e-64 Identities = 945/1468 (64%), Gaps = 14/1468 (1%) Strand=Plus/Minus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| || |||| | |||||| ||||| || ||||| || | ||||| || || || | Sbjct 1641361 TTTGTCGACGGCGGACACATTCAGAATGCCGTTGGCGTCAATGTCAAAAGTTACCTCCAC 1641302 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 || || || |||| ||||||| ||||| ||| | | |||| | ||||| || Sbjct 1641301 CTGTGGCACACCTCGGGGAGCAGGAGGGATACCTGTGAGCTCAAATTTGCCCAGGAGGTT 1641242 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595 || || || || | || |||||||| | | || || || | | ||||| Sbjct 1641241 GTTGTCCTTGGTCATGGCTCTCTCACCCTCATACACCTGAATCAGCACACCTGGCTGATT 1641182 Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654 |||||| || || | || | ||||| ||| || || || || ||||| | | | Sbjct 1641181 ATCTGAGTATGTGGAGAAGA-TCTGGGTTTGCTTGGTGGGGATGGTAGTGTTGCGTTTGA 1641123 Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714 | | | ||||||| ||||| || || || | || ||||| || |||| || || | Sbjct 1641122 TTAGAGGTGTCATAACTCCACCTGCGGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCA 1641063 Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774 || | | || ||| | || || ||| | ||| | || ||||| || |||| | Sbjct 1641062 GCAGCAGCAGATCTTGGACATTCTCTGAAGTGTCACCCATGAGGATAGCAGCCTGAACTG 1641003 Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834 | ||||| || || ||||||||||| || || | | | || || | | ||||| | Sbjct 1641002 CTGCACCGTAGGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGATCCCTGCCATTAA 1640943 Query 281835 AAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893 | |||| || |||| || | | || ||||| | | || || ||||| | || Sbjct 1640942 AGAAATCCTGCAAGAGCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACG 1640884 Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953 |||||||| | || | |||||||| || | ||| | |||| ||||| || || Sbjct 1640883 ATTTCATGGATCTTGGCCTTATCCAGCTTGGCATCTTGCAGGGCTTTCTCAACTGGCTCC 1640824 Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013 || | || || | ||||| ||||| || || ||||| || | | | Sbjct 1640823 AGTGTTCCCCTGAAGAGCTCTGAGTTGAGTTCCTCAAAGCGTGCTCTTGTGATGGAGGTG 1640764 Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073 | ||||||| ||||| || | ||| |||| ||||| ||| || || ||| || Sbjct 1640763 TAGAAATCAATGCCTTCAAATAGAGAGTCAATCTCAATGCTAGCCTGGGTGCTAGAGGAC 1640704 Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT-- 282131 || | | || || | ||||| ||||| | ||||| | | ||| | || ||| Sbjct 1640703 AGGGTCCTCTTCGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCT--CTTATTTT 1640646 Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 282191 | | | || | || | ||||| || || || || ||| | | || | || | Sbjct 1640645 GGCTGATGTCCTTCTTGTGCTTTCTTTTAAATTCCTCTACAAAGTGGCTGACCATCCGGT 1640586 Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251 | ||||| || || || || | | || | ||||| || ||| |||| | ||| | | Sbjct 1640585 TGTCAAAGTCCTCTCCACCAAGGTGTGTGTCTCCTGCAGTGGCTTTTACCTCGAAGATGC 1640526 Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311 ||||||||| | || | | |||||| ||| || ||||| | |||||| || || | Sbjct 1640525 CATCTTCAATGGTCAGGATGGACACATCAAAGGTGCCTCCACCGAGATCAAAGATGAGCA 1640466 Query 282312 CATTCATTTCTTTGTCTTGGTTT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368 |||| ||| |||| || ||||| || ||||| |||| || || || || | Sbjct 1640465 CATTGCGCTCTCC-TCTT--TTACCCTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGG 1640409 Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428 | ||||| || || |||| ||||| || |||| ||| ||||||||| || ||||||| Sbjct 1640408 GCTCATTGATGATCCTCAGGACATTCAGTCCAGAAATGACTCCTGCATCCTTTGTGGCTT 1640349 Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488 | ||||| || ||||| ||||| || || || || || || |||| || || | || Sbjct 1640348 GCCTTTGAGAGTCGTTGAAATAAGCTGGCACTGTGATGACTGCATTTGACACCCTCTGTC 1640289 Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548 | | || || ||| | | ||||||||| | | ||| || || |||| |||| Sbjct 1640288 CCAGGTAGGCCTCAGCTATCTCCTTCATTTTAACCAGGACCATGGACGAGATTTCCTCTG 1640229 Query 282549 GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 282608 | || | ||||| ||| || ||| || | || | || || | ||| Sbjct 1640228 GGTAAAAGGCCTTGGTCTCACCTTTATACTCCACCTGAACTTTGGGCTTTCCGTTATCAT 1640169 Query 282609 TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 282668 | || || || || ||||| |||||| || || || ||| |||||||||| | || Sbjct 1640168 TGATCACCTTGAAAGGCCACAGTTTCATGTCGGACTGGACAACAGGGTCATTAAACTTTC 1640109 Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728 | ||||| | |||||| || ||||| | || ||||| || || | ||| | || | | Sbjct 1640108 TTCCAATGAGTCGTTTGGCGTCAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCT 1640049 Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788 |||| ||||||||||| || ||||| || ||||| | ||||| ||||| || | Sbjct 1640048 TGGCAGCATCTCCAATAAGCCTCTCTGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTCC 1639989 Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848 || || || || || || || || || ||||| |||| || | || || ||||| Sbjct 1639988 TGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACCCCAACACAGG 1639929 Query 282849 TAAAAGTTGTTCCTAAATCAATACCAAT 282876 | | || || || | ||| || ||||| Sbjct 1639928 AATAGGTGGTGCCCAGATCGATGCCAAT 1639901 >seq10 Length=14175190 Score = 113 bits (124), Expect = 3e-19 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| ||||||||||| || ||||| || || | || ||| Sbjct 9605641 TTTTTGTCCAGGCCATAAGCAATGGCAGCAGCAGTGGGCTCATTGATGATGCGCAGCACA 9605582 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||||||| ||| |||||||| ||||| || | || || || || || || Sbjct 9605581 TTAAGCCCAGCAATGGCTCCAGCATCTTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 9605522 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| |||||||| |||| Sbjct 9605521 GCAGGAACTGTAATAACTGCAT 9605500 Score = 89.7 bits (98), Expect = 4e-12 Identities = 93/122 (76%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||| || || ||||| ||||||||||| | ||||| || || ||||| ||||||||| Sbjct 9606879 GCAGAGACGTTGAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGGACC 9606820 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 ||||| |||||||||| || || || | ||| | ||||| |||||||||| || Sbjct 9606819 CCTCTGGGAGCAGGTGGAATACCAGTCAGCTCAAACTTGCCCAGGATATTATTATCCTTG 9606760 Query 281546 GT 281547 || Sbjct 9606759 GT 9606758 >seq2267 Length=663809 Score = 109 bits (120), Expect = 4e-18 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| |||||||||||| || ||||| || || | || |||| Sbjct 516136 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTCGGCTCATTGATGATACGCAGAACA 516077 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||| ||| | ||||| ||||| ||||| || | || || || || || || Sbjct 516076 TTAAGCCCAGAAATGGTCCCTGCGTCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 516017 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTA 282479 ||||| ||||| | || |||| ||||| Sbjct 516016 GCAGGTACAGTCACCACAGCATTTGTTA 515989 >seq1563 Length=18910200 Score = 96.9 bits (106), Expect = 3e-14 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749 |||| | || ||||| || || | ||| | |||| |||||||||||||||||||| Sbjct 1054937 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATCAGCC 1054878 Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809 || || ||||| || | || || || || || | || ||||||||||| |||| Sbjct 1054877 TCTCAGTATCTGTGAAAGCCACGTAGCTGGGTGTGGTCCTGTTGCCTTGATCATTGGCAA 1054818 Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869 | || |||||||| |||| ||| | ||||| ||||| | || || || | ||||| Sbjct 1054817 TGATCTCAACTTTGCCATGTTGGAACACACCAACACAGGAGTAGGTGGTGCCAAGATCAA 1054758 Query 282870 TACCAA 282875 |||||| Sbjct 1054757 TACCAA 1054752 Score = 91.5 bits (100), Expect = 1e-12 Identities = 133/187 (71%), Gaps = 1/187 (1%) Strand=Plus/Plus Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT-GGCTGCATCTCCAATCAGA 282748 |||| | || ||||| || || | ||| | |||| || |||||||||||||||||| Sbjct 1043116 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTCTTAGGCTGCATCTCCAATCAGC 1043175 Query 282749 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808 || || ||||| || | || || || || || | || ||||||||||| ||| Sbjct 1043176 CTCTCAGTATCTGTGAAAGCCACGTAGCTGGGTGTGGTCCTGTTGCCTTGATCATTGGCA 1043235 Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868 || || |||||||| |||| ||| | ||||| ||||| | || || || | |||| Sbjct 1043236 ATGATCTCAACTTTGCCATGTTGGAACACACCAACACAGGAGTAGGTGGTGCCAAGATCA 1043295 Query 282869 ATACCAA 282875 ||||||| Sbjct 1043296 ATACCAA 1043302 >seq1078 Length=26957 Score = 89.7 bits (98), Expect = 4e-12 Identities = 437/690 (63%), Gaps = 4/690 (1%) Strand=Plus/Minus Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199 ||| | || | ||| |||||||| || || ||| | | || | ||||| ||||| Sbjct 7240 TCTTTCTTGTGTTTCCTCTTGAACTCCTCCACAAAGTGGTTGACCATGCGATTGTCAAAG 7181 Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259 || || || |||| | ||| | ||| | ||| ||| | || | || | || ||||| Sbjct 7180 TCCTCTCCACCCAGGTGAGTGTCTCCGGCCGTGGCTTTCACCTCAAAGATACCGTCTTCG 7121 Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319 | | || | | || || ||| || ||||||| |||||||| || || || | Sbjct 7120 ATTGTCAGGATGGACACGTCGAAGGTGCCTCCACCCAGGTCAAAAATCAGGACGTTACGT 7061 Query 282320 TCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 282378 ||| || ||| ||| || ||||| ||||| | || || || || || || || || Sbjct 7060 TCTCCTGACTTTCCTTTG-TCCAGACCGTACGCGATGGCGGCTGCCGTCGGCTCGTTGAT 7002 Query 282379 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 282438 || |||| || || || || || || |||||||||||||| || |||| || || Sbjct 7001 GATCCTCAGGACGTTCAGTCCTGCGATGACGCCTGCATCTTTAGTCGCCTGTCGCTGGGA 6942 Query 282439 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498 ||||| || || || || || || || || || | | || | || || | || || Sbjct 6941 GTCGTTGAAGTACGCCGGGACTGTGATGACAGCGTTGGACACCTTTTGGCCGAGGTAGGC 6882 Query 282499 GCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG 282558 || | | ||||| || | | ||| || || || | || || | | | | Sbjct 6881 CTCAGCGATCTCCTTCATCTTCACCAGGACCATGGAGGAGATCTCCTCAGG-GTAGAAGG 6823 Query 282559 C-TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617 | ||| |||| || ||| || | || | || || ||| | ||| || | Sbjct 6822 CTTTGTCTTCACCTTTATACTCCACCTGAATTTTGGGCTTCCCTCCATCTGAAATCACCT 6763 Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677 | || ||||| | ||||| || | || || | |||| ||| | ||| ||||| | Sbjct 6762 TGAAGGGCCAGTGCTTCATGTCAGCCTGCACCACTGAATCATCAAACTTTCTTCCAATCA 6703 Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737 || || |||||||| | ||| ||| | || || | || | || | ||||| || | Sbjct 6702 GTCTCTTGGCATCAAACACAGTGTTGCTGGGGTTCAGAGCCACCTGGTTCTTGGCGGCGT 6643 Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797 | |||||||| || || || || || | ||||| || || || | || || | Sbjct 6642 CCCCAATCAGCCTCTCGGTATCAGTGAAGGCCACATAGCTGGGGGTGGTCCTGTTGCCCT 6583 Query 282798 GATCATTCGCAATAATTTCAACTTTACCAT 282827 | || || || || ||||| ||||| |||| Sbjct 6582 GGTCGTTGGCGATGATTTCTACTTTCCCAT 6553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740443443292608