Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq3265 262 3e-64
seq10 113 3e-19
seq2267 109 4e-18
seq1563 96.9 3e-14
seq1078 89.7 4e-12
>seq3265
Length=3892940
Score = 262 bits (290), Expect = 3e-64
Identities = 945/1468 (64%), Gaps = 14/1468 (1%)
Strand=Plus/Minus
Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475
||| || |||| | |||||| ||||| || ||||| || | ||||| || || || |
Sbjct 1641361 TTTGTCGACGGCGGACACATTCAGAATGCCGTTGGCGTCAATGTCAAAAGTTACCTCCAC 1641302
Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535
|| || || |||| ||||||| ||||| ||| | | |||| | ||||| ||
Sbjct 1641301 CTGTGGCACACCTCGGGGAGCAGGAGGGATACCTGTGAGCTCAAATTTGCCCAGGAGGTT 1641242
Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATT 281595
|| || || || | || |||||||| | | || || || | | |||||
Sbjct 1641241 GTTGTCCTTGGTCATGGCTCTCTCACCCTCATACACCTGAATCAGCACACCTGGCTGATT 1641182
Query 281596 ATCTGAATAAGTTGTAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAA 281654
|||||| || || | || | ||||| ||| || || || || ||||| | | |
Sbjct 1641181 ATCTGAGTATGTGGAGAAGA-TCTGGGTTTGCTTGGTGGGGATGGTAGTGTTGCGTTTGA 1641123
Query 281655 TAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAA 281714
| | | ||||||| ||||| || || || | || ||||| || |||| || || |
Sbjct 1641122 TTAGAGGTGTCATAACTCCACCTGCGGTCTCAATGCCCAGAGACAGGGGAGCCACGTCCA 1641063
Query 281715 CTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAG 281774
|| | | || ||| | || || ||| | ||| | || ||||| || |||| |
Sbjct 1641062 GCAGCAGCAGATCTTGGACATTCTCTGAAGTGTCACCCATGAGGATAGCAGCCTGAACTG 1641003
Query 281775 CAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGA 281834
| ||||| || || ||||||||||| || || | | | || || | | ||||| |
Sbjct 1641002 CTGCACCGTAGGCCACAGCTTCATCTGGGTTGATGCTCTTGTTCAGATCCCTGCCATTAA 1640943
Query 281835 AAAAATT-TGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACA 281893
| |||| || |||| || | | || ||||| | | || || ||||| | ||
Sbjct 1640942 AGAAATCCTGCAAGAGCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACG 1640884
Query 281894 ATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCA 281953
|||||||| | || | |||||||| || | ||| | |||| ||||| || ||
Sbjct 1640883 ATTTCATGGATCTTGGCCTTATCCAGCTTGGCATCTTGCAGGGCTTTCTCAACTGGCTCC 1640824
Query 281954 AGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACA 282013
|| | || || | ||||| ||||| || || ||||| || | | |
Sbjct 1640823 AGTGTTCCCCTGAAGAGCTCTGAGTTGAGTTCCTCAAAGCGTGCTCTTGTGATGGAGGTG 1640764
Query 282014 TTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGAT 282073
| ||||||| ||||| || | ||| |||| ||||| ||| || || ||| ||
Sbjct 1640763 TAGAAATCAATGCCTTCAAATAGAGAGTCAATCTCAATGCTAGCCTGGGTGCTAGAGGAC 1640704
Query 282074 AGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT-- 282131
|| | | || || | ||||| ||||| | ||||| | | ||| | || |||
Sbjct 1640703 AGGGTCCTCTTCGCTCTCTCACAAGCTGTGCGCAGTCTCCTCACTGCTCT--CTTATTTT 1640646
Query 282132 GATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGAT 282191
| | | || | || | ||||| || || || || ||| | | || | || |
Sbjct 1640645 GGCTGATGTCCTTCTTGTGCTTTCTTTTAAATTCCTCTACAAAGTGGCTGACCATCCGGT 1640586
Query 282192 TATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTC 282251
| ||||| || || || || | | || | ||||| || ||| |||| | ||| | |
Sbjct 1640585 TGTCAAAGTCCTCTCCACCAAGGTGTGTGTCTCCTGCAGTGGCTTTTACCTCGAAGATGC 1640526
Query 282252 CATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTA 282311
||||||||| | || | | |||||| ||| || ||||| | |||||| || || |
Sbjct 1640525 CATCTTCAATGGTCAGGATGGACACATCAAAGGTGCCTCCACCGAGATCAAAGATGAGCA 1640466
Query 282312 CATTCATTTCTTTGTCTTGGTTT---TTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 282368
|||| ||| |||| || ||||| || ||||| |||| || || || || |
Sbjct 1640465 CATTGCGCTCTCC-TCTT--TTACCCTTATCCAGGCCATAGGCAATGGCTGCTGCTGTGG 1640409
Query 282369 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 282428
| ||||| || || |||| ||||| || |||| ||| ||||||||| || |||||||
Sbjct 1640408 GCTCATTGATGATCCTCAGGACATTCAGTCCAGAAATGACTCCTGCATCCTTTGTGGCTT 1640349
Query 282429 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTC 282488
| ||||| || ||||| ||||| || || || || || || |||| || || | ||
Sbjct 1640348 GCCTTTGAGAGTCGTTGAAATAAGCTGGCACTGTGATGACTGCATTTGACACCCTCTGTC 1640289
Query 282489 CAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTG 282548
| | || || ||| | | ||||||||| | | ||| || || |||| ||||
Sbjct 1640288 CCAGGTAGGCCTCAGCTATCTCCTTCATTTTAACCAGGACCATGGACGAGATTTCCTCTG 1640229
Query 282549 GAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACAT 282608
| || | ||||| ||| || ||| || | || | || || | |||
Sbjct 1640228 GGTAAAAGGCCTTGGTCTCACCTTTATACTCCACCTGAACTTTGGGCTTTCCGTTATCAT 1640169
Query 282609 TAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTC 282668
| || || || || ||||| |||||| || || || ||| |||||||||| | ||
Sbjct 1640168 TGATCACCTTGAAAGGCCACAGTTTCATGTCGGACTGGACAACAGGGTCATTAAACTTTC 1640109
Query 282669 TACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATT 282728
| ||||| | |||||| || ||||| | || ||||| || || | ||| | || | |
Sbjct 1640108 TTCCAATGAGTCGTTTGGCGTCAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGGTTCT 1640049
Query 282729 TGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGC 282788
|||| ||||||||||| || ||||| || ||||| | ||||| ||||| || |
Sbjct 1640048 TGGCAGCATCTCCAATAAGCCTCTCTGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTCC 1639989
Query 282789 GATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAAC 282848
|| || || || || || || || || ||||| |||| || | || || |||||
Sbjct 1639988 TGTTGCCCTGGTCGTTGGCGATGATCTCCACTTTGCCATGCTGGAAAACCCCAACACAGG 1639929
Query 282849 TAAAAGTTGTTCCTAAATCAATACCAAT 282876
| | || || || | ||| || |||||
Sbjct 1639928 AATAGGTGGTGCCCAGATCGATGCCAAT 1639901
>seq10
Length=14175190
Score = 113 bits (124), Expect = 3e-19
Identities = 110/142 (77%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || || ||||| |||| ||||||||||| || ||||| || || | || |||
Sbjct 9605641 TTTTTGTCCAGGCCATAAGCAATGGCAGCAGCAGTGGGCTCATTGATGATGCGCAGCACA 9605582
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
||||| |||||||| ||| |||||||| ||||| || | || || || || || ||
Sbjct 9605581 TTAAGCCCAGCAATGGCTCCAGCATCTTTGGTGGCCTGACGCTGGGAGTCATTGAAGTAA 9605522
Query 282452 GCAGGAACAGTAATAACGGCAT 282473
|||||||| |||||||| ||||
Sbjct 9605521 GCAGGAACTGTAATAACTGCAT 9605500
Score = 89.7 bits (98), Expect = 4e-12
Identities = 93/122 (76%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||| || || ||||| ||||||||||| | ||||| || || ||||| |||||||||
Sbjct 9606879 GCAGAGACGTTGAGAATGCCATTGGCATCAATGTCAAAGGTCACCTCAATCTGAGGGACC 9606820
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
||||| |||||||||| || || || | ||| | ||||| |||||||||| ||
Sbjct 9606819 CCTCTGGGAGCAGGTGGAATACCAGTCAGCTCAAACTTGCCCAGGATATTATTATCCTTG 9606760
Query 281546 GT 281547
||
Sbjct 9606759 GT 9606758
>seq2267
Length=663809
Score = 109 bits (120), Expect = 4e-18
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391
||||| || || ||||| |||| |||||||||||| || ||||| || || | || ||||
Sbjct 516136 TTTTTGTCCAGGCCATAAGCAATAGCAGCAGCAGTCGGCTCATTGATGATACGCAGAACA 516077
Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451
||||| |||| ||| | ||||| ||||| ||||| || | || || || || || ||
Sbjct 516076 TTAAGCCCAGAAATGGTCCCTGCGTCTTTGGTGGCCTGGCGCTGAGAGTCATTGAAGTAG 516017
Query 282452 GCAGGAACAGTAATAACGGCATCTGTTA 282479
||||| ||||| | || |||| |||||
Sbjct 516016 GCAGGTACAGTCACCACAGCATTTGTTA 515989
>seq1563
Length=18910200
Score = 96.9 bits (106), Expect = 3e-14
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGAT 282749
|||| | || ||||| || || | ||| | |||| ||||||||||||||||||||
Sbjct 1054937 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTCTTGGCTGCATCTCCAATCAGCC 1054878
Query 282750 GTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAA 282809
|| || ||||| || | || || || || || | || ||||||||||| ||||
Sbjct 1054877 TCTCAGTATCTGTGAAAGCCACGTAGCTGGGTGTGGTCCTGTTGCCTTGATCATTGGCAA 1054818
Query 282810 TAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAA 282869
| || |||||||| |||| ||| | ||||| ||||| | || || || | |||||
Sbjct 1054817 TGATCTCAACTTTGCCATGTTGGAACACACCAACACAGGAGTAGGTGGTGCCAAGATCAA 1054758
Query 282870 TACCAA 282875
||||||
Sbjct 1054757 TACCAA 1054752
Score = 91.5 bits (100), Expect = 1e-12
Identities = 133/187 (71%), Gaps = 1/187 (1%)
Strand=Plus/Plus
Query 282690 CAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTT-GGCTGCATCTCCAATCAGA 282748
|||| | || ||||| || || | ||| | |||| || ||||||||||||||||||
Sbjct 1043116 CAAAGACTGTGTTGGTGGGGTTCATGGCAACCTGATTCTTAGGCTGCATCTCCAATCAGC 1043175
Query 282749 TGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCA 282808
|| || ||||| || | || || || || || | || ||||||||||| |||
Sbjct 1043176 CTCTCAGTATCTGTGAAAGCCACGTAGCTGGGTGTGGTCCTGTTGCCTTGATCATTGGCA 1043235
Query 282809 ATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCA 282868
|| || |||||||| |||| ||| | ||||| ||||| | || || || | ||||
Sbjct 1043236 ATGATCTCAACTTTGCCATGTTGGAACACACCAACACAGGAGTAGGTGGTGCCAAGATCA 1043295
Query 282869 ATACCAA 282875
|||||||
Sbjct 1043296 ATACCAA 1043302
>seq1078
Length=26957
Score = 89.7 bits (98), Expect = 4e-12
Identities = 437/690 (63%), Gaps = 4/690 (1%)
Strand=Plus/Minus
Query 282140 TCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAA 282199
||| | || | ||| |||||||| || || ||| | | || | ||||| |||||
Sbjct 7240 TCTTTCTTGTGTTTCCTCTTGAACTCCTCCACAAAGTGGTTGACCATGCGATTGTCAAAG 7181
Query 282200 TCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCA 282259
|| || || |||| | ||| | ||| | ||| ||| | || | || | || |||||
Sbjct 7180 TCCTCTCCACCCAGGTGAGTGTCTCCGGCCGTGGCTTTCACCTCAAAGATACCGTCTTCG 7121
Query 282260 AGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATT 282319
| | || | | || || ||| || ||||||| |||||||| || || || |
Sbjct 7120 ATTGTCAGGATGGACACGTCGAAGGTGCCTCCACCCAGGTCAAAAATCAGGACGTTACGT 7061
Query 282320 TCTT-TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAAT 282378
||| || ||| ||| || ||||| ||||| | || || || || || || || ||
Sbjct 7060 TCTCCTGACTTTCCTTTG-TCCAGACCGTACGCGATGGCGGCTGCCGTCGGCTCGTTGAT 7002
Query 282379 AATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGA 282438
|| |||| || || || || || || |||||||||||||| || |||| || ||
Sbjct 7001 GATCCTCAGGACGTTCAGTCCTGCGATGACGCCTGCATCTTTAGTCGCCTGTCGCTGGGA 6942
Query 282439 ATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGC 282498
||||| || || || || || || || || || | | || | || || | || ||
Sbjct 6941 GTCGTTGAAGTACGCCGGGACTGTGATGACAGCGTTGGACACCTTTTGGCCGAGGTAGGC 6882
Query 282499 GCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTG 282558
|| | | ||||| || | | ||| || || || | || || | | | |
Sbjct 6881 CTCAGCGATCTCCTTCATCTTCACCAGGACCATGGAGGAGATCTCCTCAGG-GTAGAAGG 6823
Query 282559 C-TTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTT 282617
| ||| |||| || ||| || | || | || || ||| | ||| || |
Sbjct 6822 CTTTGTCTTCACCTTTATACTCCACCTGAATTTTGGGCTTCCCTCCATCTGAAATCACCT 6763
Query 282618 TAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTA 282677
| || ||||| | ||||| || | || || | |||| ||| | ||| ||||| |
Sbjct 6762 TGAAGGGCCAGTGCTTCATGTCAGCCTGCACCACTGAATCATCAAACTTTCTTCCAATCA 6703
Query 282678 ATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCAT 282737
|| || |||||||| | ||| ||| | || || | || | || | ||||| || |
Sbjct 6702 GTCTCTTGGCATCAAACACAGTGTTGCTGGGGTTCAGAGCCACCTGGTTCTTGGCGGCGT 6643
Query 282738 CTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTT 282797
| |||||||| || || || || || | ||||| || || || | || || |
Sbjct 6642 CCCCAATCAGCCTCTCGGTATCAGTGAAGGCCACATAGCTGGGGGTGGTCCTGTTGCCCT 6583
Query 282798 GATCATTCGCAATAATTTCAACTTTACCAT 282827
| || || || || ||||| ||||| ||||
Sbjct 6582 GGTCGTTGGCGATGATTTCTACTTTCCCAT 6553
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740443443292608
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