Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq1988 105 1e-17 seq10 102 1e-16 >seq1988 Length=2502155 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 58385 TGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCATACTTAGG 58444 ||||||||||| || || ||||| | |||||||| ||||||||||||||||| || ||| Sbjct 1095688 TGGTGGTACTACATCTCCAAAGGAGTGGAATACTTGGATACAGTGTTTTTCATCCTGAGG 1095747 Query 58445 AAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGTTTACTTTA 58504 || ||||| || || || ||||| || ||||| || ||||| | || ||||| | | Sbjct 1095748 AAGAAGTTCAACCAGGTCAGCTTCCTCCACGTCTACCATCACTGCACCATGTTCATCCTG 1095807 Query 58505 GGATGGGTAGGTATTAAATGG 58525 | ||| | ||||| || ||| Sbjct 1095808 TGGTGGATTGGTATCAAGTGG 1095828 >seq10 Length=14175190 Score = 102 bits (112), Expect = 1e-16 Identities = 121/164 (74%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 58377 GAGCATTATGGTGGTACTATATATCTAAAGGGATAGAATACTTAGATACAGTGTTTTTCA 58436 |||| | |||||||| | || |||||||| || || ||| | || ||||||||||||| Sbjct 5533673 GAGCTCTGTGGTGGTATTTCATCTCTAAAGGCATCGAGTACCTGGACACAGTGTTTTTCA 5533614 Query 58437 TACTTAGGAAAAAGTTTAATCATGTTAGCTTTCTACACGTATATCATCATTTTACTATGT 58496 | || ||||| || ||||| || |||| ||| || || || || || || | || |||| Sbjct 5533613 TTCTGAGGAAGAAATTTAACCAGGTTACCTTCCTGCATGTCTACCACCACTGCACCATGT 5533554 Query 58497 TTACTTTAGGATGGGTAGGTATTAAATGGTTTGCAGGAGGTCAG 58540 | || | | ||| | || || |||||| | |||||||| ||| Sbjct 5533553 TCACGCTCTGGTGGATCGGCATCAAATGGGTGGCAGGAGGACAG 5533510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903368197626880