Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq10 158 1e-33 >seq10 Length=14175190 Score = 158 bits (174), Expect = 1e-33 Identities = 584/894 (65%), Gaps = 26/894 (3%) Strand=Plus/Plus Query 162120 ATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGA 162179 ||| ||||| || || || ||||| ||| | || | | ||| | || || || | Sbjct 382271 ATCAAACTTATTTGCAAAGAGGTGTTGCTGGCTC---AGGAGCCAGTGGAGGTCACCGGC 382327 Query 162180 TCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATC 162239 ||| |||| || || | |||| || || |||| || | ||| |||| |||| Sbjct 382328 TCCATACACACAGACAGCCCGCCTGTAAGAACCAGTGCAAGGTGAATAGGGGGCTCCATT 382387 Query 162240 GTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGA 162299 | |||||| || | | || ||||||||| | || || || ||||||||||| || Sbjct 382388 TTTCACATCACCTGCTAAATAGCTCCACTTAACCACCCGAGCGAAGGCCTGCATGTCTGA 382447 Query 162300 GGTGTCGTACTTGTACACTGAC-GGCACGGCTCCAGGAACACCCGGCAGTCTCTGTAGAG 162358 || |||||| || || | ||||| | ||||||||| |||| ||||| |||| Sbjct 382448 TACATCATACTTG-ACGTTGGCGGGCACTGACCCAGGAACAGAGGGCATCCTCTGCAGAG 382506 Query 162359 TAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGA 162418 | ||||||| ||| ||||| || || || || |||||| |||||||| || | | | Sbjct 382507 TGGCCCACAAGTGCTCGTCGGGGCTGTATGTGTCCTTCTCCCACTCCAGGAGTTTCTGAA 382566 Query 162419 CCGTTTTATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTAC 162478 || | | || | | || || | | || || || | |||||| || | | Sbjct 382567 CCTCTCTGTCCGTCATCACGTGTTTCACAAATGCTCTCGTGACCACAAAGTAGGCATTCC 382626 Query 162479 CAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGT-TGACTACC 162537 | || |||| ||| ||| || || ||||| |||| || | || ||| | | | Sbjct 382627 CCGAGAACATGGGGCTGCTGATTGGTGGGGG-GCTTT-TCCTCACATTTGTCCGGATGAC 382684 Query 162538 ATTCCCTCTACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTAGACG--GGT 162595 | | || ||| ||| | | ||| | ||| ||| || |||| | ||| Sbjct 382685 A--CTGTCGGTGACGTTGTGGTGATACTGCCAGC-GGC---CTTTCTTGTAGCTGTTGGT 382738 Query 162596 G--TTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGAC-GCACCATCTCTA 162652 | |||||||| | ||||| | || | ||||||||| || | |||||||| Sbjct 382739 GGCCTCGGTCTCCATGCTGTTTCTCCCGTTTAGGGCCTTCAG-TGTCTTAACCATCTCCC 382797 Query 162653 GATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC-- 162710 |||||| || | ||| ||||| || || ||| || | | || ||||| || Sbjct 382798 CATTGGTTTTGATGGGGAAGTCTGTCCCACAGGTGTTGAGCAGGTACCTCCACCGGACAT 382857 Query 162711 GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGC 162770 || |||| | |||||| | | ||||||||||| ||||| || || |||||| || Sbjct 382858 GC-GAGT-TGAGCAGATCTTTCATGCAGTTCAGATCTGCCTGTACTCGGGACCACGAGGC 382915 Query 162771 GTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC 162830 |||||| || || ||||| ||||||| | ||| |||||| ||||| || || || | Sbjct 382916 GTACACCACCCTTTCCAATTTAGTGGCTATAAACACATTGGGAAAACATGACACAATAGC 382975 Query 162831 CATCACGGCC-AGTGAGAACATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGAT 162889 | ||||||| ||| | | || |||| || ||||| |||||||| | | Sbjct 382976 CTCCACGGCCTTCTGAAAGTCTTTTGTGGACTTT-TGGTCCACGTGCACGCAGTAGATGT 383034 Query 162890 TCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCA 162949 ||||||| ||||| | || | || | || ||| |||||||| ||||| | || | || Sbjct 383035 TCTGAGGAGCGTAAACAGCTCGTAGAAGTCGCTCAAACATCTCAATCTTCTCATGGATCA 383094 Query 162950 CGATAGAATACGCTATGGGGAACTCAGCCTCCTCGCGACTGAGAGACCCTGTAA 163003 | || || || |||||||| || || |||||| |||||||| | |||||| Sbjct 383095 CCATGGAGTAGGCTATGGGAAAGTCTCTCTCCTCTTCACTGAGAGGCACTGTAA 383148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578404466636800