Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2387 172 5e-38 seq14 96.9 3e-15 seq1563 87.8 2e-12 >seq2387 Length=643009 Score = 172 bits (190), Expect = 5e-38 Identities = 953/1497 (64%), Gaps = 56/1497 (4%) Strand=Plus/Minus Query 146938 TTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTA 146997 ||||| ||| | | ||| | ||||| || ||||| | || ||||| |||| || || Sbjct 87995 TTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTG 87936 Query 146998 GGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAA- 147056 ||||| |||| || || || | | |||| ||| || ||||||| Sbjct 87935 GGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAGG 87876 Query 147057 AGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAGCACTCC 147116 || || ||||||||||| | ||||||| | |||||||||||||||||| | || Sbjct 87875 AGCTT-CCAGTCCCACAGGTCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCC 87817 Query 147117 TCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGC-GCCAATTCAC 147175 | ||| |||| ||| | | || |||| ||| || | || |||| || | Sbjct 87816 TTTGCTGACGGGGGAGCCTTGGTATGTCTCGTAGGGGCCGA-GCTCGGCAGCCAGCTCGC 87758 Query 147176 AGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCG 147235 |||| ||||| || || | ||||| ||||| || ||| || |||| || | | Sbjct 87757 AGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTGAG 87698 Query 147236 CTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATAC 147295 | || | || || | || ||||| || | |||||||| ||||||||||| | || Sbjct 87697 CCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACAC 87638 Query 147296 CGACGCCGATAGGTCGATGCTTTTCG-TTGCTGCGCTTCGC-GCTC--GCTATGGGATAG 147351 ||| || || || | || || ||| || |||| | ||| | | |||||| Sbjct 87637 CGATTCCTATTGGCCTGTGG----CGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAG 87582 Query 147352 TGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTGAGT 147411 | ||| || || |||||||| ||||| || | ||||| || | || Sbjct 87581 TAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACATACGCCAGC 87522 Query 147412 TTCTCGAAATCATAAGTCCCGTC---TTCGACACGTACGCATTGGTTCACGGCGATAGAC 147468 || | || ||| |||||| || | |||| ||| || ||| | ||||| || Sbjct 87521 TTTTTAAAGTCAAAAGTCCGTTCAGGTGTGACA--TAC--AT--GTTGAGAGCGATGGAG 87468 Query 147469 GCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAGG 147528 |||||||| ||||| || ||| || || | |||| | |||||||| | ||| ||| Sbjct 87467 GCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGCAGAGG 87408 Query 147529 TTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTG 147588 ||||||||||| ||| |||| || ||||| ||||| |||| ||||| ||||||||| Sbjct 87407 TTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGTCTTTG 87348 Query 147589 AAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGATAA--ACCTA-TGCAGG 147645 | |||||||| ||| ||||| || || | | |||||| | || ||| Sbjct 87347 TACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACT---CGATAATGGCGTACCACAGC 87291 Query 147646 TCCTGCGC--TC-GCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAAC 147702 | ||| || || ||| |||| || | ||||| || ||||| ||| | | Sbjct 87290 TGCTGAGCCTTCACCACTCGCT--TGA-CCCTCCCCTCCTTCTCGTATTTGGTGTAGAGC 87234 Query 147703 CGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGC 147762 ||| ||||| || || |||| ||| | || ||||| |||| | |||||||||||| Sbjct 87233 TCCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCAGG 87174 Query 147763 GACCACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTAC 147822 ||||| | || | || | ||| |||| || || | |||||| ||||| Sbjct 87173 GACCAGTCTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCACAGGGCGTAG 87114 Query 147823 ATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATTAAGCACGC 147880 | |||||| | || |||||| ||||| || |||| |||| | || | | Sbjct 87113 AAAAGATCTCTGGCTCTTTGC--TCCTCCTTCCCTGTGTTCTTCTTCAGCTCCAGGAAGT 87056 Query 147881 TATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACC---TTTACGCTTTC 147937 | | ||| |||||| || || | ||| | ||| | || || | | || | Sbjct 87055 CGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTGTTGC 86996 Query 147938 CGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGC 147997 | ||||||||||| | || || ||||||| | || | || |||||| |||| ||| Sbjct 86995 CACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAGCCCGT 86936 Query 147998 TCGCAGTGCCGTTGGT---GGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 | | | |||| ||||| || | || | ||| || || ||| | | |||| | Sbjct 86935 TGGAATTGCCATTGGTTCCGGCA---ATGTAGCT-CCCCG---TCG-ATCTGATGCAGCT 86884 Query 148055 TA-----ACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGT 148109 | ||||| || || ||| | | || || ||| ||||| | || || Sbjct 86883 GACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTC 86824 Query 148110 GTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGG 148169 || ||||| ||||||||||||| || | | | |||| || || ||| || || Sbjct 86823 ATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGG 86764 Query 148170 AATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCAT 148229 | ||||| || ||| || || ||| ||||| || ||| | || | | Sbjct 86763 CCTGTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAACCACTTCTCTGAGAG 86704 Query 148230 CATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCG 148289 || | || ||||| || || | ||||| || | ||| ||||| | || || | Sbjct 86703 CAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCCACTCT 86644 Query 148290 CATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATT 148349 ||| ||||||||||| || || ||||| |||| |||||||||||| | || || | Sbjct 86643 CATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGTTGATCTTCAACAGGTAGGACCT 86584 Query 148350 TTCGAGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTAAGCGATGGC 148406 || || || ||| | |||||| | ||||| |||||| ||| || |||||| Sbjct 86583 CTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTGTCGAAAATGATGGC 86527 >seq14 Length=1339370 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| | ||| || |||||| ||||| || |||| | Sbjct 521066 GACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCA 521125 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| |||||||| || |||||||| || ||||| ||||| || || ||| | Sbjct 521126 AAGATGAGACGCTGCTGGTCTGGAGGGATTCCTTCCTTATCCTGGATCTTGGCTTTGACG 521185 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || ||| | ||||| || || | || | || || |||||||| || || Sbjct 521186 TTCTCGATGGTGTCGCTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 521245 Query 132110 ATGAAAATCTGCATGACT 132127 | ||| ||||||||| || Sbjct 521246 ACGAAGATCTGCATGCCT 521263 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || || ||||||||||| || |||||| ||||| |||||||| || | | Sbjct 521522 GACTCCTTCTGGATGTTGTAGTCAGACAAGGTACGGCCGTCTTCCAGCTGTTTGCCAGCA 521581 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| || | ||| || || ||||| || ||||||||||| || || || | Sbjct 521582 AAGATCAGCCTCTGCTGGTCCGGAGGGATTCCTTCTTTATCCTGGATCTTGGCCTTGACA 521641 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | || ||| | ||||| || || | || | || ||||||||||| || || Sbjct 521642 TTTTCAATGGTGTCGCTGGGCTCGACCTCCAAAGTGATGGTCTTACCAGTCAGGGTCTTC 521701 Query 132110 ATGAAAATCTGCAT 132123 | || |||||||| Sbjct 521702 ACAAAGATCTGCAT 521715 >seq1563 Length=18910200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || ||||||||||| | ||| || | Sbjct 5357154 CGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 5357213 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || |||| | |||| || | ||| || ||||| || |||||||| || Sbjct 5357214 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 5357273 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | || | |||||| | ||||| || || | || | Sbjct 5357274 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATG 5357333 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || || ||||| || ||||| | || ||||||||| Sbjct 5357334 GTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCATG 5357369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476588513306880