Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq1756 167 3e-36 >seq1756 Length=808860 Score = 167 bits (184), Expect = 3e-36 Identities = 143/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | |||||| | ||||||||| || || | ||||||||| || ||||| Sbjct 97654 CTTGAGGCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAA 97595 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || ||||| |||||||| ||||||| |||||||||||| ||||| ||||| || || Sbjct 97594 AGGCACTCCCAGACCCATGTCGCCCGACCGCTGGTACAGCTGACACGACAGCTCACCATC 97535 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTC 147158 |||||| |||||||| ||| |||||| || ||||| |||||| ||||||||| Sbjct 97534 ACACACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTC 97478 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/140 (76%), Gaps = 6/140 (4%) Strand=Plus/Minus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 ||||| ||||||||||||||||| |||||||| || ||||||||||| || ||||| | Sbjct 97153 GCCCCGAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGGTCGCCCTCCTCTCTGTCC 97094 Query 147343 GAGAAGCCCGCCCGCTTG---AGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACT 147399 | ||| | | | ||| || || || ||||||||| ||| ||||| || ||| Sbjct 97093 GTGAA---CCCAAGGTTGTCCAGGAAATCCCGGGACCCGTTGGCATCCCAAATCTTCACC 97037 Query 147400 CCCTTGGCGGAGAGCTCCTT 147419 || || || ||||||||||| Sbjct 97036 CCTTTCGCTGAGAGCTCCTT 97017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583460225971200