Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1563 82.4 6e-11 >seq1563 Length=18910200 Score = 82.4 bits (90), Expect = 6e-11 Identities = 128/182 (70%), Gaps = 1/182 (1%) Strand=Plus/Minus Query 106235 GTTTGTCATTTATAAGAGTTTAAAA-ATGCAAATTTTTGTTAAAACATTGACTGGCAAGA 106293 || ||||| || | | |||| |||| ||||| || ||||| ||||| | |||||||||| Sbjct 5357394 GTGTGTCAATTTTCATAGTTAAAAACATGCAGATCTTTGTGAAAACCCTCACTGGCAAGA 5357335 Query 106294 CCATTACCGTGGAAACAGAACCCGGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCG 106353 |||| ||| | || || ||| ||||| | ||| | |||||| || || | Sbjct 5357334 CCATCACCCTTGAGGTTGAGCCCAGCGATACCATTGAGAACGTGAAAGCCAAGATCCAGG 5357275 Query 106354 ACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAG 106413 |||| |||||| | ||| || || || ||||| || | ||| ||||| || | |||| Sbjct 5357274 ACAAGGAAGGCATTCCCCCAGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAG 5357215 Query 106414 AT 106415 || Sbjct 5357214 AT 5357213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 402310927883264