Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2387 565 3e-156 seq1563 107 3e-18 >seq2387 Length=643009 Score = 565 bits (626), Expect = 3e-156 Identities = 1300/1944 (67%), Gaps = 23/1944 (1%) Strand=Plus/Minus Query 68653 TTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTA 68712 ||||| ||||| ||| |||||| | |||||| || || || | || ||||| ||||| Sbjct 88097 TTCTTCATCTCCTCACTCCACAGTCCTCTCTCTGTCAAGTCTTTGAGCAGATGAGGATTC 88038 Query 68713 ACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCC 68772 || || || || || ||||| | || || || ||||| || || ||||| || | || Sbjct 88037 ACGATCTGGAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCCTCG 87978 Query 68773 ACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAAT 68832 | || || || || ||||| || || || || || || || ||||| || |||| || Sbjct 87977 ATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCCGTGGGCATCGGGGCCAGCAGC 87918 Query 68833 AAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGA 68892 | || || || | || ||| | ||| || || || || | ||||| ||||| || Sbjct 87917 AGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCCTTCAGGAGCTTCCAGTCCCACAGG 87858 Query 68893 TCAGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCA 68952 |||| || | ||| | ||||| || || || || || || | || || Sbjct 87857 TCAGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCTTTGCTGACGGGGGAGCCT 87798 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | ||||| || || || || || |||| || || || || ||||| | || || Sbjct 87797 TGGTATGTCTCGTAGGGGCCGAGCTCGGCAGCCAGCTCGCAGCTCGCCTCCAGGGCGGCG 87738 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGA 69072 || || || || || || |||| | || || || || || ||| || || || Sbjct 87737 TAGTAGATGGTCTCAAAGATCTGGGTGTTCAGCAGCTGAGCCTCGGCACTTTCAAAGGGG 87678 Query 69073 TAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGT 69132 ||| | | || || || ||||| ||||| ||||| || || || || || || || || Sbjct 87677 TAACGCATCAGGATGAAGGCATCAGCCAAACCCTGCACACCGATTCCTATTGGCCTGTGG 87618 Query 69133 CTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTA 69192 | ||| || || | || ||||| || | ||||| || ||||| ||||| || || || Sbjct 87617 CGCTTGTTGGACTTCTCTGCTTCAGGCACCGGATAGTAGTTAATGTCTATGATCTTGTTC 87558 Query 69193 AGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAAAATCAAAT---CGTCCA 69249 || ||| ||| | |||||| ||| | | || || ||| ||||| ||| || Sbjct 87557 AGGTTTTTGACGATTACTTTGGTCACATACGCCAGCTTTTTAAAGTCAAAAGTCCGTTCA 87498 Query 69250 TCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAA 69309 | | ||| |||| || || || | || || |||||||| || |||||||||| Sbjct 87497 GGTGTGACATACATGTTGAGAGCGATGGAGGCCAGATTACAGACCGCTACCTCATCCTCG 87438 Query 69310 TTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGC 69369 | | |||| | || ||||| || || || || |||||||| || ||||| || ||| Sbjct 87437 CTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGC 87378 Query 69370 TGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATC 69429 || || ||||| |||| |||||||| ||||| || || | || ||||| ||||| || Sbjct 87377 TGGTTGCTCTTCCTGTTGCAGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTC 87318 Query 69430 TGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTATTACGGTCTTGTAACGCTTC 69489 || || |||||||| | | ||| | | ||| || | || |||| | | | Sbjct 87317 TGGGACTCGATAATGGCGTACCACAGCTGCTGAGCCTTCACCACTCGCTTGACCCTCCCC 87258 Query 69490 TCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCA 69549 || || || |||| || || ||| ||||| || |||||||| || |||| || Sbjct 87257 TCCTTCTCGTATTTGGTGTAGAGCTCCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCG 87198 Query 69550 GGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAAT 69609 || || || || |||||||||| ||||| | | | || || | ||||| || Sbjct 87197 GGGCACTCGTTCGGACACATCAGGGACCAGTCTTGGTTGCTCTCCACCCTCTTCATGAAC 87138 Query 69610 AGATCGGGAATCCAAAGAGC-TATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT 69668 | ||||| ||||| || || || ||| |||||||||| ||| | || || || ||||| Sbjct 87137 AAGTCGGGGATCCACAGGGCGTAGAAA-AGATCTCTGGCTCTTTGCTCCTCCTTCCCTGT 87079 Query 69669 AttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 69728 || || || || || || || || | || ||| | |||||||| || || || || || Sbjct 87078 GTTCTTCTTCAGCTCCAGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGC 87019 Query 69729 CATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGAC 69788 | | |||| |||| || || || ||||| || | ||| | ||| ||||| || || || Sbjct 87018 GAAGGCTCCGGGTCTCTTGTTGCCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAAC 86959 Query 69789 TCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCT 69848 ||||||||| || | | || || || || ||||| ||||| | ||| || || || | Sbjct 86958 TCTCAGCATGGGGACCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCGT 86899 Query 69849 TGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACA 69908 | | || || | | | || |||||||| ||| ||| ||||| || || || Sbjct 86898 CGATCTGATGCAGCTGACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCA 86839 Query 69909 ACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACA 69968 | |||| |||||||| || || || ||||| || || ||||| || || || || Sbjct 86838 CTGCTTCAGCGTGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCA 86779 Query 69969 GCTAGACATTTGATG-ATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGA 70027 ||| |||| || | ||| | ||||| ||||| || | ||||||||| ||||| |||| Sbjct 86778 GCTGGACAGCTGTGGCCTGT-TGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGA 86720 Query 70028 ACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGA 70086 |||| || || || ||||| ||||| || || || || | || ||||| ||| || Sbjct 86719 ACCACTTCTCTGAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTCTG-TGG 86661 Query 70087 ATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATT 70146 || || | || || | ||| | ||| |||||||| || || || |||||| || || Sbjct 86660 ATGCCGACAGCCACTCTCATTAGCATGTGCTGAGGCCGCTCGGCCACTTTATTGTTGATC 86601 Query 70147 TTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTT 70206 ||||||||||| || | |||||||| || || ||||| ||||||| || || ||||| Sbjct 86600 TTCAACAGGTAGGACCTCTCCAGAGTCTTGAAGCCAAAGAAGTTGTAGGAGAAATCTCTG 86541 Query 70207 TCGTAAATAATAACAGAATTTAGTTTATCCTTATATTTGGTAACTATATCCATAACAGT- 70265 ||| |||| || | || || || || || | | | || || || || || Sbjct 86540 TCGAAAATGATGGCTGAGTTGAGGCGGTCTTTGTTCTCGAGGACGATGTC---AAGGGTC 86484 Query 70266 --AGGTGAGATAATCGGAGA---TCGTTTACCATTTTTAGGATTAACATAGTTGAATAAA 70320 ||||| || || || ||||| || ||| || || |||||| | | Sbjct 86483 TCCTTGGAGATCATGGGGGAGTGGCGTTT---GTTCAGAGGGTTGACGTAGTTGTACAGG 86427 Query 70321 TCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATT 70380 || ||||| |||||||| || | ||| ||||| || ||||| | || || | ||| || Sbjct 86426 TCCTCCATGACATCACTGAACACTTTCTTTGTCTCTTTGTGCAGGTTGGAGACGGCGATC 86367 Query 70381 CTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCA 70440 | ||| || || || |||||||| || |||| || || ||| ||||| || || || Sbjct 86366 CGGGCGGCGAGGATGGCATAGTCTGGGTGTTTGGTTGTGAGAGTGGCTGCGATCTCTGCG 86307 Query 70441 GCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATG 70500 || | ||| || | || | || || |||||| | || | || || || || ||||| Sbjct 86306 GCCAGCGTGTCCAGCTCCACTGTGGTGACTCCGCTGTACAAACCCTGGATCACCTTCATC 86247 Query 70501 GCTATTTTGATAGGATCTATGAATTCTGTGTTCAGACCATAACATAATTTTCT-AATACG 70559 | || | | || || | || || | |||||| || || || || |||| || || Sbjct 86246 GTGATCTGGGCCGGGTCCACAAAGTCAGAGTTCAGCCCGTAGCA-AAGCTTCTGGATGCG 86188 Query 70560 AGATGTAATTTTATCAAACATAAC 70583 ||| || ||||| || ||||| || Sbjct 86187 AGAGGTGATTTTGTCGAACATGAC 86164 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 68441 TCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATAT 68500 |||| |||||||| ||||| || || |||||| || |||| ||||| || || || | Sbjct 88980 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCGGCGATGTGGATGT 88921 Query 68501 TCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCT 68560 ||| || || || || || ||||| ||||| | || || ||||| || | || ||| Sbjct 88920 TCAGGGACTGGCTCTGGTCAATGAAGGCTCCGCGGTCGGCAGCCATCTTCAGTATGGTCT 88861 Query 68561 TTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAA 68611 | || | |||||||| | || || | | ||| || | ||||||||||| Sbjct 88860 TCTGGGAGATTTCCCACACGGTTTTGTACAGCTGCTTCAAATCATCTGGAA 88810 >seq1563 Length=18910200 Score = 107 bits (118), Expect = 3e-18 Identities = 103/132 (78%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 69321 TATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTT 69380 || ||||||||| || ||||| || ||||||| || |||||||| ||||| || ||||| Sbjct 8605809 TACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTGGTTGCTCTT 8605868 Query 69381 TTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGAT 69440 ||||||||||||||||||| || || | || || |||||||| |||| || || || Sbjct 8605869 CCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTGTGACTCAAT 8605928 Query 69441 AATAGATTTCCA 69452 || || | ||| Sbjct 8605929 GATGGAGTACCA 8605940 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686876103141120