Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2667 109 4e-19 seq2049 91.5 1e-13 >seq2667 Length=223062 Score = 109 bits (120), Expect = 4e-19 Identities = 80/93 (86%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 77862 CTTCTCTGACAAACGCCCAGGCATCTTGCTCTGTTGCAAACTTCTTAAATACGGCTGCTG 77921 || |||||||||||||||||||||||| ||||| ||||||||||||| | ||| || Sbjct 119030 CTCCTCTGACAAACGCCCAGGCATCTTTCTCTGATGCAAACTTCTTATAAGAGGCGTTTG 118971 Query 77922 GGAATTTGTCTACTTGGCTCTTACATTCATCCC 77954 | |||||||| ||||||||||| |||||||||| Sbjct 118970 GAAATTTGTCCACTTGGCTCTTGCATTCATCCC 118938 Score = 102 bits (112), Expect = 6e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 77311 CCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGAC 77370 |||||| ||||||||||| | || ||| |||||||||||| ||| || || |||||||| Sbjct 120218 CCAGACCACCTCCAGCTCTGAGTTCAGTCGGTCCAGCTTCACAAAATCTTCTTTGTTGAC 120159 Query 77371 AACTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCA 77424 || | ||||| | |||||||||| |||| ||||||||||||| ||||| Sbjct 120158 GACAGGACCTCCAGATTTCAGCCTCCAGTTGTTCAGCTTCCAGTTCTTCACCCA 120105 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| ||||| || ||| ||||||||||||||| |||||||||||||| |||||||| | Sbjct 119981 CACCGTTGATTGTAAACTTGCTGTCTGTGTAGAGAACCAGCTTCTTGATGTTGTTCTCTT 119922 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| ||| || | || |||||| Sbjct 119921 TGGCTTGTTCCAGCGCTCTGCAGGCTGCCTGG 119890 >seq2049 Length=2641258 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/141 (75%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAG-ACTGTCAAGCCAGC 87386 ||| ||||||| || || || ||| |||| || || || || ||| ||||||| ||||| Sbjct 1259268 CCTACTCCCAGCTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAGGACTGTCAGTCCAGC 1259209 Query 87387 AAACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCAA 87446 ||||||||||| || | || | | ||| || | |||||||||||||||||||||| Sbjct 1259208 GAACACAGCACAGGTCAGGAATAAGGCTTGCAGCACAGTGGAGTATTCATAGAAGGTCA- 1259150 Query 87447 AGTTGTGGCCACAGAAACTGC 87467 || || | ||||||||| Sbjct 1259149 --CTGAGGAGAGAGAAACTGC 1259131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397437554067040