Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq14 91.5 1e-13
seq1563 82.4 6e-11
>seq14
Length=1339370
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 27018 TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCG 27077
|| ||||| | || || | || | ||| | || || || || || || ||||||||
Sbjct 521030 TTTCCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 521089
Query 27078 CTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGC 27137
| | |||| | ||||| ||||| || ||||| | ||||||||||| || || ||
Sbjct 521090 GAGAGGGTGCGGCCATCTTCCAGCTGCTTCCCGGCAAAGATGAGACGCTGCTGGTCTGGA 521149
Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197
|| | || || ||||| ||||||| ||| | | | || | ||||| ||| ||
Sbjct 521150 GGGATTCCTTCCTTATCCTGGATCTTGGCTTTGACGTTCTCGATGGTGTCGCTGGGCTCG 521209
Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || || || || | ||||| ||||| || ||||| ||||| |||||
Sbjct 521210 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 521259
Score = 89.7 bits (98), Expect = 4e-13
Identities = 157/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078
||||||| | || || | || | ||| | || || || || || || ||||||||
Sbjct 521487 TGCCTCCTCTCAGACGGAGCACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 521546
Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138
|| | | || ||||||| |||||||| || || | || || | ||| || ||||| |
Sbjct 521547 ACAAGGTACGGCCGTCTTCCAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGAG 521606
Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198
| | || |||||||| ||||||| || | |||| | ||||| ||| || |
Sbjct 521607 GGATTCCTTCTTTATCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGCTGGGCTCGA 521666
Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| || | ||| || | || || ||||| || ||||||||||| |||||
Sbjct 521667 CCTCCAAAGTGATGGTCTTACCAGTCAGGGTCTTCACAAAGATCTGCAT 521715
>seq1563
Length=18910200
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092
|||| || | ||| | || || || || || || |||||||| | | |||| |
Sbjct 5357154 CGCAGGACAAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCA 5357213
Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152
||||| ||||| || ||||| | || || | ||| || || || || | || || ||
Sbjct 5357214 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGAATGCCTTCCTTG 5357273
Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212
|| ||||||| ||||| | | || | || || ||| ||||| || || || ||
Sbjct 5357274 TCCTGGATCTTGGCTTTCACGTTCTCAATGGTATCGCTGGGCTCAACCTCAAGGGTGATG 5357333
Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
| ||||| || || |||||||||||||| |||||
Sbjct 5357334 GTCTTGCCAGTGAGGGTTTTCACAAAGATCTGCAT 5357368
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424914678794496
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |