Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2387 210 3e-49 seq1563 87.8 2e-12 >seq2387 Length=643009 Score = 210 bits (232), Expect = 3e-49 Identities = 905/1403 (65%), Gaps = 52/1403 (4%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||||||||| | ||||| | || | | | || || || |||| ||| || |||||||| Sbjct 88002 GTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 87943 Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826 ||| || ||||| || |||| || || ||||| | | || | | ||| || Sbjct 87942 GGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTC 87883 Query 110827 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 ||| || | | |||||| | | | || | || || || |||||||||| |||| Sbjct 87882 CTTCAGGAGCTTCCAGTCCCACAGGTCAG-TGGGCGTCTTCT-CCCACATGTCGTACTGG 87825 Query 110885 AGCACCCCTTGG--GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 || | |||| | |||| ||||| || | | || || |||| || | | ||| Sbjct 87824 AGGATGCCTTTGCTGACGGGGGAG--CCTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAG 87767 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 ||| || |||||||||||||||| |||| || ||||| |||||||| | | |||| Sbjct 87766 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCA 87707 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 | || || || | ||||| | ||| || || || || |||| || | || Sbjct 87706 GCAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAAC 87647 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 111119 | || ||||| | || || || ||||| ||| | || ||||| | | | ||| | Sbjct 87646 CCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTT---CTCTGCTTCAGGCA 87590 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 | ||||| | || |||| |||| ||| || |||||| || || | || | Sbjct 87589 CCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTG---ACGATTACTTTGGTCA 87533 Query 111180 CATGA---AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAA 111233 ||| || |||| | | |||||||| || |||| |||||||| | | Sbjct 87532 CATACGCCAGCTTTTTAAAGTCAAAAGTCCG------TTCAGGTGTGACATACATGTTGA 87479 Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293 | ||||| || |||| ||| || || || |||||||| ||||| || | |||| Sbjct 87478 GAGCGATGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTT 87419 Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353 |||| || | |||| | || || || |||| |||| ||||| |||||| |||||| Sbjct 87418 CTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGC 87359 Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413 | || || ||||| |||||||| || || || || || ||||| || | || ||| || | Sbjct 87358 AGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGT 87299 Query 111414 TCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTG 111472 ||| | | | | | || || | || ||| ||| |||||| |||||| || ||| Sbjct 87298 ACCACAGCTGCTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCGTATTTGGTG 87240 Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACA 111531 ||||| | || |||||||| ||| | || ||| || || || || || ||||| Sbjct 87239 TAGAGCTCCTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACA 87181 Query 111532 GAAAAGAGACCATTGACCACCTTCCTCA--ACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589 | || ||||| | | || ||| |||| ||||||||| | ||| || |||||| Sbjct 87180 CATCAGGGACCAGT--CTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCAC 87123 Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTC 111648 |||| | || |||||||| | ||| || | ||| ||| || | | ||| Sbjct 87122 AGGGCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCT-TCTTCAGCTC 87064 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CT 111704 ||||| || | | || |||||||||||| || || | |||| | ||| || Sbjct 87063 CAGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCT 87004 Query 111705 TTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 | | ||| | | || | || || || || ||| ||| | || | ||||| || | Sbjct 87003 CTTGTTGCC-ACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGA 86945 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT-TGGCTCTCA--CAT 111821 | || | || | ||||| || || ||| || | | | ||| | || Sbjct 86944 CCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGT-AGCTCCCCGTCGATCTGATGCAG 86886 Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881 | || || || || || || ||| | || ||||| | || |||| | | || | Sbjct 86885 CT--GACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCG 86828 Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941 | |||| || || | ||| ||| ||||| |||||| |||||||| ||||||| || Sbjct 86827 TGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCT 86768 Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGG 112000 | || || || |||||||||||||| || || | ||||| ||||| || | | Sbjct 86767 GTGGCCTGTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAAC-CACTTCTCT 86709 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 || | | || ||| ||||| | | | | || || ||| | ||||||||||| || Sbjct 86708 GAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCC 86649 Query 112061 ACCCGCATGAACATGTACTGTGG 112083 || | ||| | ||||| ||| || Sbjct 86648 ACTCTCATTAGCATGTGCTGAGG 86626 >seq1563 Length=18910200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336 ||||||||||| || ||||| || | ||| || || || |||| ||||| || Sbjct 8605800 TGTGTACTCTACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTG 8605859 Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396 ||| |||||| |||| || || ||||||||||||||||| || || || || || ||||| Sbjct 8605860 GTTGCTCTTCCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTG 8605919 Query 111397 TGA 111399 ||| Sbjct 8605920 TGA 8605922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628002105676800