Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 210 3e-49
seq1563 87.8 2e-12
>seq2387
Length=643009
Score = 210 bits (232), Expect = 3e-49
Identities = 905/1403 (65%), Gaps = 52/1403 (4%)
Strand=Plus/Minus
Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766
||||||||| | ||||| | || | | | || || || |||| ||| || ||||||||
Sbjct 88002 GTAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGA 87943
Query 110767 GGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTC 110826
||| || ||||| || |||| || || ||||| | | || | | ||| ||
Sbjct 87942 GGCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTC 87883
Query 110827 CTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884
||| || | | |||||| | | | || | || || || |||||||||| ||||
Sbjct 87882 CTTCAGGAGCTTCCAGTCCCACAGGTCAG-TGGGCGTCTTCT-CCCACATGTCGTACTGG 87825
Query 110885 AGCACCCCTTGG--GACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942
|| | |||| | |||| ||||| || | | || || |||| || | | |||
Sbjct 87824 AGGATGCCTTTGCTGACGGGGGAG--CCTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAG 87767
Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002
||| || |||||||||||||||| |||| || ||||| |||||||| | | ||||
Sbjct 87766 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCA 87707
Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062
| || || || | ||||| | ||| || || || || |||| || | ||
Sbjct 87706 GCAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAAC 87647
Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 111119
| || ||||| | || || || ||||| ||| | || ||||| | | | ||| |
Sbjct 87646 CCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTT---CTCTGCTTCAGGCA 87590
Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179
| ||||| | || |||| |||| ||| || |||||| || || | || |
Sbjct 87589 CCGGATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTG---ACGATTACTTTGGTCA 87533
Query 111180 CATGA---AGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGACATACTTTGGAA 111233
||| || |||| | | |||||||| || |||| |||||||| | |
Sbjct 87532 CATACGCCAGCTTTTTAAAGTCAAAAGTCCG------TTCAGGTGTGACATACATGTTGA 87479
Query 111234 GGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTT 111293
| ||||| || |||| ||| || || || |||||||| ||||| || | ||||
Sbjct 87478 GAGCGATGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTT 87419
Query 111294 CTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGC 111353
|||| || | |||| | || || || |||| |||| ||||| |||||| ||||||
Sbjct 87418 CTGTGCAGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGC 87359
Query 111354 ACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCT 111413
| || || ||||| |||||||| || || || || || ||||| || | || ||| || |
Sbjct 87358 AGGCGTCTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGT 87299
Query 111414 TCCAAACAT-CGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTG 111472
||| | | | | | || || | || ||| ||| |||||| |||||| || |||
Sbjct 87298 ACCACAGCTGCTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCGTATTTGGTG 87240
Query 111473 TAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGACCTGGTGCCTTGTCTGGACA 111531
||||| | || |||||||| ||| | || ||| || || || || || |||||
Sbjct 87239 TAGAGCTCCTCGAACTCCTCTCCC-CAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACA 87181
Query 111532 GAAAAGAGACCATTGACCACCTTCCTCA--ACCCGCTTCATGAAAAGGTCTGGAATCCAC 111589
| || ||||| | | || ||| |||| ||||||||| | ||| || ||||||
Sbjct 87180 CATCAGGGACCAGT--CTTGGTTGCTCTCCACCCTCTTCATGAACAAGTCGGGGATCCAC 87123
Query 111590 AGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTC 111648
|||| | || |||||||| | ||| || | ||| ||| || | | |||
Sbjct 87122 AGGGCGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTGTTCT-TCTTCAGCTC 87064
Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CT 111704
||||| || | | || |||||||||||| || || | |||| | ||| ||
Sbjct 87063 CAGGAAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCT 87004
Query 111705 TTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764
| | ||| | | || | || || || || ||| ||| | || | ||||| || |
Sbjct 87003 CTTGTTGCC-ACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGA 86945
Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT-TGGCTCTCA--CAT 111821
| || | || | ||||| || || ||| || | | | ||| | ||
Sbjct 86944 CCAGCCCGTTGGAATTGCCATTGGTTCCGGCAATGT-AGCTCCCCGTCGATCTGATGCAG 86886
Query 111822 CATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAG 111881
| || || || || || || ||| | || ||||| | || |||| | | || |
Sbjct 86885 CT--GACCGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCG 86828
Query 111882 TTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCT 111941
| |||| || || | ||| ||| ||||| |||||| |||||||| ||||||| ||
Sbjct 86827 TGTCATAAATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCT 86768
Query 111942 GCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCT-TGG 112000
| || || || |||||||||||||| || || | ||||| ||||| || | |
Sbjct 86767 GTGGCCTGTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAAC-CACTTCTCT 86709
Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060
|| | | || ||| ||||| | | | | || || ||| | ||||||||||| ||
Sbjct 86708 GAGAGCAGGTTGTAGGTCTCGATGGCCGCCTCGATATCTGTTCTGTGGATGCCGACAGCC 86649
Query 112061 ACCCGCATGAACATGTACTGTGG 112083
|| | ||| | ||||| ||| ||
Sbjct 86648 ACTCTCATTAGCATGTGCTGAGG 86626
>seq1563
Length=18910200
Score = 87.8 bits (96), Expect = 2e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 111277 TGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTG 111336
||||||||||| || ||||| || | ||| || || || |||| ||||| ||
Sbjct 8605800 TGTGTACTCTACTATCTCTGTGCACAGATTGCTGGATTTGATGGTGCCCAGATTCTGCTG 8605859
Query 111337 GTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTG 111396
||| |||||| |||| || || ||||||||||||||||| || || || || || |||||
Sbjct 8605860 GTTGCTCTTCCTGTTACAGGCGTCCTTGTAGAGCATGTATGGTGTGCCAGTTTCTGTCTG 8605919
Query 111397 TGA 111399
|||
Sbjct 8605920 TGA 8605922
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628002105676800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |