Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq2387 224 1e-53 seq1563 100 4e-16 seq963 96.9 4e-15 seq375 96.9 4e-15 seq52 96.9 4e-15 >seq2387 Length=643009 Score = 224 bits (248), Expect = 1e-53 Identities = 842/1303 (65%), Gaps = 38/1303 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 ||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| |||||| Sbjct 88001 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 87942 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301 || |||||||| || |||| || |||||||| | || || | || || ||| Sbjct 87941 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCC 87882 Query 118302 TTGAG-AGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 118358 || || ||| ||| |||| | | | || | | | | || |||||| || ||||| Sbjct 87881 TTCAGGAGCTTCC-AGTCCCACAGGTCAG--TGGGCGTCTTCTCCCACATGTCGTACTGG 87825 Query 118359 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416 ||||| |||| | |||| || || || | ||||||| || ||||| | | | Sbjct 87824 AGGATGCCTTTGCTGACG--GGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAG 87767 Query 118417 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA 118476 ||| ||| |||||||||| ||||| |||| || || || ||||| || | | |||| Sbjct 87766 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCA 87707 Query 118477 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 118536 || |||||| | ||||| | | || || || || |||| || | || Sbjct 87706 GCAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAAC 87647 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGG 118596 | || ||||||| || ||||| | || | | | || |||||| || ||| | Sbjct 87646 CCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCG 87587 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656 |||| | || | || || | | | || || |||||| || || || || | | Sbjct 87586 GATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACATACG 87527 Query 118657 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGA 118713 ||||||| | |||||| | || |||| |||||||| | || |||| Sbjct 87526 CCAGCTTTTTAAAGTCAAAAGTCCG------TTCAGGTGTGACATACATGTTGAGAGCGA 87473 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 | || ||||||||||| || | |||||||| ||||| || | ||||| |||| Sbjct 87472 TGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGC 87413 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 | | ||| | || |||||||||| ||||| || || ||| |||| || || | Sbjct 87412 AGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 87353 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893 | ||||| ||||||||||| || || || || || ||||||| || ||| || | || | Sbjct 87352 CTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACC--A 87295 Query 118894 CATCGGC--AGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950 || | || ||| || || | || ||| | | |||||| | |||||| || ||||||| Sbjct 87294 CAGCTGCTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGA 87236 Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010 | | || ||||| || ||| | ||| ||||| || || | || || | | Sbjct 87235 GCTCCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCA 87176 Query 119011 GAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 119067 | ||||| ||| | |||| |||| ||||||||| | ||| |||||||| || | Sbjct 87175 GGGACCAGTCTTGGTTGCTCTCC---ACCCTCTTCATGAACAAGTCGGGGATCCACAGGG 87119 Query 119068 CCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 119126 | |||| ||||| | | | ||| || | |||| || || || ||||| Sbjct 87118 CGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTCTTCTTCAGCTCCAGG 87060 Query 119127 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACG 119182 ||||| | | || |||||| || |||||||||| |||| | || || | Sbjct 87059 AAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTG 87000 Query 119183 ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242 | ||| |||||| || || | || ||| ||| | || | ||||| || | | Sbjct 86999 TTG-CCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAG 86941 Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302 || | ||| | |||||| || || ||| | | | ||||| | || Sbjct 86940 CCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGAC 86881 Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362 || || || || || ||| | || ||||| | ||||||| | | || || | || Sbjct 86880 CGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATA 86821 Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422 || || ||||| ||| |||| | |||| ||||||||||| |||| || ||||| Sbjct 86820 AATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCT 86761 Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465 | || ||||| |||||||| || || | |||||| ||||| Sbjct 86760 GTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAAC 86718 >seq1563 Length=18910200 Score = 100 bits (110), Expect = 4e-16 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 |||||| || | ||||||| ||||||| |||||||||| |||| ||| ||||| ||||| Sbjct 8604819 ATAGATGTTACTGGTGTATGCCTCAAAGGACTCATTGTTGCCCAGGATCTGGGCAGTGGA 8604878 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273 ||||||||||| || |||| ||| |||||||| Sbjct 8604879 AGCTGTGGGCATTGGGGCCAAGAGCAGGCTGTT 8604911 >seq963 Length=229635 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 212701 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 212642 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| |||||| || || |||||||||||||| ||||||||| || || | Sbjct 212641 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 212582 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 212581 CCACCACACGCTC 212569 >seq375 Length=30079 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 25675 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 25734 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| |||||| || || |||||||||||||| ||||||||| || || | Sbjct 25735 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 25794 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 25795 CCACCACACGCTC 25807 >seq52 Length=1057507 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 13946 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 14005 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| |||||| || || |||||||||||||| ||||||||| || || | Sbjct 14006 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 14065 Query 130155 CAAAGAGACGCTC 130167 | | | |||||| Sbjct 14066 CCACCACACGCTC 14078 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618405762484480