Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 224 1e-53
seq1563 100 4e-16
seq963 96.9 4e-15
seq375 96.9 4e-15
seq52 96.9 4e-15
>seq2387
Length=643009
Score = 224 bits (248), Expect = 1e-53
Identities = 842/1303 (65%), Gaps = 38/1303 (3%)
Strand=Plus/Minus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| ||| | ||||| | ||| | | |||| ||||| |||| ||| ||||| ||||||
Sbjct 88001 TAGATGTTGCTGGTGTAGGCCTCGATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 87942
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301
|| |||||||| || |||| || |||||||| | || || | || || |||
Sbjct 87941 GCCGTGGGCATCGGGGCCAGCAGCAGGCTGTTCCTGACTCCGTGTTTGGCGATCTTCTCC 87882
Query 118302 TTGAG-AGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGG 118358
|| || ||| ||| |||| | | | || | | | | || |||||| || |||||
Sbjct 87881 TTCAGGAGCTTCC-AGTCCCACAGGTCAG--TGGGCGTCTTCTCCCACATGTCGTACTGG 87825
Query 118359 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 118416
||||| |||| | |||| || || || | ||||||| || ||||| | | |
Sbjct 87824 AGGATGCCTTTGCTGACG--GGGGAGCCTTGGTATGTCTCGTAGGGGCCGAGCTCGGCAG 87767
Query 118417 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA 118476
||| ||| |||||||||| ||||| |||| || || || ||||| || | | ||||
Sbjct 87766 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGGTGTTCA 87707
Query 118477 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 118536
|| |||||| | ||||| | | || || || || |||| || | ||
Sbjct 87706 GCAGCTGAGCCTCGGCACTTTCAAAGGGGTAACGCATCAGGATGAAGGCATCAGCCAAAC 87647
Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGG 118596
| || ||||||| || ||||| | || | | | || |||||| || ||| |
Sbjct 87646 CCTGCACACCGATTCCTATTGGCCTGTGGCGCTTGTTGGACTTCTCTGCTTCAGGCACCG 87587
Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656
|||| | || | || || | | | || || |||||| || || || || | |
Sbjct 87586 GATAGTAGTTAATGTCTATGATCTTGTTCAGGTTTTTGACGATTACTTTGGTCACATACG 87527
Query 118657 GAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCAT---TGACATACTTAGGAAGGGCGA 118713
||||||| | |||||| | || |||| |||||||| | || ||||
Sbjct 87526 CCAGCTTTTTAAAGTCAAAAGTCCG------TTCAGGTGTGACATACATGTTGAGAGCGA 87473
Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773
| || ||||||||||| || | |||||||| ||||| || | ||||| ||||
Sbjct 87472 TGGAGGCCAGATTACAGACCGCTACCTCATCCTCGCTGGTGTATTCAACGATTTCTGTGC 87413
Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833
| | ||| | || |||||||||| ||||| || || ||| |||| || || |
Sbjct 87412 AGAGGTTGCTGCATTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTCCTGTTGCAGGCGT 87353
Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA 118893
| ||||| ||||||||||| || || || || || ||||||| || ||| || | || |
Sbjct 87352 CTTTGTACAGCATGTATGGTGTACCGGTTTCTGTCTGGGACTCGATAATGGCGTACC--A 87295
Query 118894 CATCGGC--AGCTGGCA-CAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGA 118950
|| | || ||| || || | || ||| | | |||||| | |||||| || |||||||
Sbjct 87294 CAGCTGCTGAGCCTTCACCACTCGC-TTGACCCTCCCCTCCTTCTCGTATTTGGTGTAGA 87236
Query 118951 GGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGA 119010
| | || ||||| || ||| | ||| ||||| || || | || || | |
Sbjct 87235 GCTCCTCGAACTCCTCTCCCCAGCACTCGTCCAGCCCGGGGCACTCGTTCGGACACATCA 87176
Query 119011 GAGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 119067
| ||||| ||| | |||| |||| ||||||||| | ||| |||||||| || |
Sbjct 87175 GGGACCAGTCTTGGTTGCTCTCC---ACCCTCTTCATGAACAAGTCGGGGATCCACAGGG 87119
Query 119068 CCGAGAAGAGATC-CCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAA 119126
| |||| ||||| | | | ||| || | |||| || || || |||||
Sbjct 87118 CGTAGAAAAGATCTCTGGCTCTTTGCTCCTCCTTCCCTGTG-TTCTTCTTCAGCTCCAGG 87060
Query 119127 AAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACG 119182
||||| | | || |||||| || |||||||||| |||| | || || |
Sbjct 87059 AAGTCGAAAACGTCAAAGTGCCATGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTCTTG 87000
Query 119183 ACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGAT 119242
| ||| |||||| || || | || ||| ||| | || | ||||| || | |
Sbjct 86999 TTG-CCACCCTGGTCGACGTAACGGGCCGTGTTGTTGTAAACTCTCAGCATGGGGACCAG 86941
Query 119243 ACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGTGGAT 119302
|| | ||| | |||||| || || ||| | | | ||||| | ||
Sbjct 86940 CCCGTTGGAATTGCCATTGGTTCCGGCAATGTAGCTCCCCGTCGATCTGATGCAGCTGAC 86881
Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362
|| || || || || ||| | || ||||| | ||||||| | | || || | ||
Sbjct 86880 CGCCACGCCGATTCCTCCGGCCGATTTGGAGATGAGGGCGCACTGCTTCAGCGTGTCATA 86821
Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422
|| || ||||| ||| |||| | |||| ||||||||||| |||| || |||||
Sbjct 86820 AATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGTGGCCT 86761
Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAAC 119465
| || ||||| |||||||| || || | |||||| |||||
Sbjct 86760 GTTGGTTCCAGCATTGAAGAGTGTAGGAGAGGCGTGGGTGAAC 86718
>seq1563
Length=18910200
Score = 100 bits (110), Expect = 4e-16
Identities = 78/93 (84%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240
|||||| || | ||||||| ||||||| |||||||||| |||| ||| ||||| |||||
Sbjct 8604819 ATAGATGTTACTGGTGTATGCCTCAAAGGACTCATTGTTGCCCAGGATCTGGGCAGTGGA 8604878
Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273
||||||||||| || |||| ||| ||||||||
Sbjct 8604879 AGCTGTGGGCATTGGGGCCAAGAGCAGGCTGTT 8604911
>seq963
Length=229635
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 212701 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 212642
Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154
||| |||||| |||||| || || |||||||||||||| ||||||||| || || |
Sbjct 212641 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 212582
Query 130155 CAAAGAGACGCTC 130167
| | | ||||||
Sbjct 212581 CCACCACACGCTC 212569
>seq375
Length=30079
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 25675 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 25734
Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154
||| |||||| |||||| || || |||||||||||||| ||||||||| || || |
Sbjct 25735 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 25794
Query 130155 CAAAGAGACGCTC 130167
| | | ||||||
Sbjct 25795 CCACCACACGCTC 25807
>seq52
Length=1057507
Score = 96.9 bits (106), Expect = 4e-15
Identities = 101/133 (76%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094
||||||| | | |||||| || || |||||| ||| || ||||| || || | |||||
Sbjct 13946 CCTCGTCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 14005
Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154
||| |||||| |||||| || || |||||||||||||| ||||||||| || || |
Sbjct 14006 TCAGCCAGAAGATCGCAGCGAACGAACCAGAGAAGAAGATTCCCTCCACAGCGGCAAAGG 14065
Query 130155 CAAAGAGACGCTC 130167
| | | ||||||
Sbjct 14066 CCACCACACGCTC 14078
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618405762484480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |