Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq2387 185 1e-41 seq2122 87.8 2e-12 seq963 87.8 2e-12 seq375 87.8 2e-12 seq52 87.8 2e-12 >seq2387 Length=643009 Score = 185 bits (204), Expect = 1e-41 Identities = 952/1490 (64%), Gaps = 40/1490 (3%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| | ||| | ||||| |||| || || | ||| || || | | | Sbjct 86626 CCTCAGCACATGCTAATGAGAGTGGCTGTCGGCATCCACAGAACAGATATCGAGGCGGCC 86685 Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | ||||| ||| || | | || | | || ||||| ||||| | || || ||||| Sbjct 86686 ATCGAGACCTACAACCTGCTCTCAGAGAAGTG-GTTCACCCACGCCTCTCCTACACTCTT 86744 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||||||||| || || || || ||||||| |||||||| |||||| ||||| || Sbjct 86745 CAATGCTGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGA 86804 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 | ||| | || || |||| || || | | |||| || | ||||| || | ||| || Sbjct 86805 CAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCGGCCGG 86864 Query 104461 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 104517 || || || || || | || | ||| | | | || ||| || || Sbjct 86865 AGGAATCGGCGTGGCGGTCA--GCTGCATCAGATCGACGGGGAGCTAC-ATTGCCGGAAC 86921 Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577 ||||| | || | || | | || ||||| | || | ||| ||| || || || Sbjct 86922 CAATGGCAATTCCAACGGGCTGGTCCCCATGCTGAGAGTTTACAACAACACGGCCCGTTA 86981 Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 || | || | ||| | | | || ||| | |||| | || || |||||||||| Sbjct 86982 CGTCGACCAGGGTGG-CAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCATGGC 87040 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 || || | | || ||||| ||| || ||| ||| | |||||| | | Sbjct 87041 ACTTTGACGTTTTCGACTTCCTGGAGCTGAAGAAGAACACAGGGAAGGAGGAG-CAAAGA 87099 Query 104694 GCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752 ||| | ||||| |||| ||| || ||||| || || | ||||||||||| || |||| Sbjct 87100 GCCAGAGATCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGGGT---GGAG 87156 Query 104753 AGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGT 104808 || | | ||||| || | ||||| || || || || || ||| ||| | Sbjct 87157 AGCAACCAAGACTGGTCCCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTGCTG- 87215 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868 ||| |||||||| || | || ||||| || |||||| | || || ||| | |||| Sbjct 87216 GGGAGAGGAGTTCGAGGAGCTCTACACCAAATACGAGAAGGAGGGGAGGGTCAA-GCGAG 87274 Query 104869 -GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927 |||| ||| | ||||| | || ||| || |||| || || || || ||||||| Sbjct 87275 TGGTGAAGGCTCAGCAGCTGTGGTACGCCATTATCGAGTCCCAGACAGAAACCGGTACAC 87334 Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987 |||||||||| |||||||||||||| ||| ||||| || || |||| |||| | Sbjct 87335 CATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCA 87394 Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047 |||| | ||| ||||| ||||||||| | |||| || | | |||||| || | Sbjct 87395 TCAAATGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGAGGATGAGGTAGCGG 87454 Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107 | ||||| || || || ||||||||| || |||||| || || | ||| |||| Sbjct 87455 TCTGTAATCTGGCCTCCATCGCTCTCAACATGTATGTCACACCTGA---ACGGACTTTTG 87511 Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167 | | | |||| || | || || ||| || ||||||||| |||| | || | Sbjct 87512 ACTTTAAAAAGCTGGCGTATGTGACCAAAGTAATCGTCAAAAACCTGAACAAGATCATAG 87571 Query 105168 ATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224 | | || | || || || ||| || || || || | | | ||| | |||| Sbjct 87572 ACATTAACTACTATCCGGTGCCTGA---AGCAGAGAAGTCCAACAAGCGCCACAGGCCAA 87628 Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATT 105284 | || ||||||| |||||| | || |||| ||||| || || || | ||||| Sbjct 87629 TAGGAATCGGTGTGCAGGGTTTGGCTGATGCCTTCATCCTGATGCGTTACCCCTTTGAAA 87688 Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344 | ||| || || | || | | || ||||||||||| || ||||||| || | Sbjct 87689 GTGCCGAGGCTCAGCTGCTGAACACCCAGATCTTTGAGACCATCTACTACGCCGCCCTGG 87748 Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404 ||||||| | ||| |||| | | || || || || || | | || || || | Sbjct 87749 AGGCGAGCTGCGAGCTGGCTGCCGAGCTCGGCCCCTACGAGACATACCAAGGCTCCCCCG 87808 Query 105405 -CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGA 105462 | || |||| | || || | || ||||||| || || | ||| | | || Sbjct 87809 TCAGCA-AAGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCACTGACCTGTGGGA 87866 Query 105463 CTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521 || ||||||| || ||||| ||| | | || | | ||||| || || ||| Sbjct 87867 CT-GGAAGCTCCTGAAGGAGAAGATCGCCAAACACGGAGTCAGGAACAGCCTGCTGCTGG 87925 Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581 | || ||||| || ||||||||||| || ||| |||| || || || | | | || ||| Sbjct 87926 CCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCT 87985 Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641 |||| | |||||||| | || |||| | |||||||| ||| || || | Sbjct 87986 ACACCAGCAACATCTACACCCGCAGGGTCCTCTCTGGAGAGTTCCAGATCGTGAATCCTC 88045 Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691 |||| | | ||| | | ||||| || || ||| |||| |||||| Sbjct 88046 ATCTGCTCAAAGACTTGACAGAGAGAGGACTGTGGAGTGAGGAGATGAAG 88095 >seq2122 Length=1387681 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 |||||| | | || ||||| ||| ||||| |||||||||||||| || ||| || Sbjct 1083500 GAGCGAATTGTGGCTTTTGCAGCTGTGGAGGGAATCTTCTTCTCTGGCTCATTCGCTGCC 1083559 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 || ||||||||||||||| |||| || ||||| || || || ||||| ||||| ||| Sbjct 1083560 ATCTATTGGCTCAAGAAGAGAGGCCTAATGCCCGGGCTTACCTATTCCAATGAGCTGATC 1083619 Query 94924 TCTCGTGACGAGG 94936 | | || |||| Sbjct 1083620 AGTAGGGATGAGG 1083632 >seq963 Length=229635 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||||||||| ||| || || | ||||| Sbjct 212581 GCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTG 212640 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 212641 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 212700 Query 94936 G 94936 | Sbjct 212701 G 212701 >seq375 Length=30079 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||||||||| ||| || || | ||||| Sbjct 25795 GCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTG 25736 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 25735 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 25676 Query 94936 G 94936 | Sbjct 25675 G 25675 >seq52 Length=1057507 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 || ||||| ||| ||||| ||||||||||||||||| ||| || || | ||||| Sbjct 14066 GCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTG 14007 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 |||||| |||| || ||||| || || ||||||||||||||| ||| | |||||| Sbjct 14006 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 13947 Query 94936 G 94936 | Sbjct 13946 G 13946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583233036785920