Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09]
3,808 sequences; 668,481,366 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq2387 185 1e-41
seq2122 87.8 2e-12
seq963 87.8 2e-12
seq375 87.8 2e-12
seq52 87.8 2e-12
>seq2387
Length=643009
Score = 185 bits (204), Expect = 1e-41
Identities = 952/1490 (64%), Gaps = 40/1490 (3%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| | ||| | ||||| |||| || || | ||| || || | | |
Sbjct 86626 CCTCAGCACATGCTAATGAGAGTGGCTGTCGGCATCCACAGAACAGATATCGAGGCGGCC 86685
Query 104282 TTGGAGACATACGACAAGATGTCCCA-AGGTATGTTCATTCACGCAACACCAACCCTCTT 104340
| ||||| ||| || | | || | | || ||||| ||||| | || || |||||
Sbjct 86686 ATCGAGACCTACAACCTGCTCTCAGAGAAGTG-GTTCACCCACGCCTCTCCTACACTCTT 86744
Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400
||||||||| || || || || ||||||| |||||||| |||||| ||||| ||
Sbjct 86745 CAATGCTGGAACCAACAGGCCACAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGA 86804
Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460
| ||| | || || |||| || || | | |||| || | ||||| || | ||| ||
Sbjct 86805 CAGCATCGAAGGCATTTATGACACGCTGAAGCAGTGCGCCCTCATCTCCAAATCGGCCGG 86864
Query 104461 GGGTATTGGGATGCACATCCATGATG--TGAGAGCCAATAA-ATCTCGTATTCGGGGGAC 104517
|| || || || || | || | ||| | | | || ||| || ||
Sbjct 86865 AGGAATCGGCGTGGCGGTCA--GCTGCATCAGATCGACGGGGAGCTAC-ATTGCCGGAAC 86921
Query 104518 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 104577
||||| | || | || | | || ||||| | || | ||| ||| || || ||
Sbjct 86922 CAATGGCAATTCCAACGGGCTGGTCCCCATGCTGAGAGTTTACAACAACACGGCCCGTTA 86981
Query 104578 TGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGC 104633
|| | || | ||| | | | || ||| | |||| | || || ||||||||||
Sbjct 86982 CGTCGACCAGGGTGG-CAACAAGAGACCCGGAGCCTTCGCCATGTACCTGGAGCCATGGC 87040
Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693
|| || | | || ||||| ||| || ||| ||| | |||||| | |
Sbjct 87041 ACTTTGACGTTTTCGACTTCCTGGAGCTGAAGAAGAACACAGGGAAGGAGGAG-CAAAGA 87099
Query 104694 GCC-GCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 104752
||| | ||||| |||| ||| || ||||| || || | ||||||||||| || ||||
Sbjct 87100 GCCAGAGATCTTTTCTACGCCCTGTGGATCCCCGACTTGTTCATGAAGAGGGT---GGAG 87156
Query 104753 AGTGGCAAT---TGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGA-TGCCGT 104808
|| | | ||||| || | ||||| || || || || || ||| ||| |
Sbjct 87157 AGCAACCAAGACTGGTCCCTGATGTGTCCGAACGAGTGCCCCGGGCTGGACGAGTGCTG- 87215
Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGAC 104868
||| |||||||| || | || ||||| || |||||| | || || ||| | ||||
Sbjct 87216 GGGAGAGGAGTTCGAGGAGCTCTACACCAAATACGAGAAGGAGGGGAGGGTCAA-GCGAG 87274
Query 104869 -GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACAC 104927
|||| ||| | ||||| | || ||| || |||| || || || || |||||||
Sbjct 87275 TGGTGAAGGCTCAGCAGCTGTGGTACGCCATTATCGAGTCCCAGACAGAAACCGGTACAC 87334
Query 104928 CATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGA 104987
|||||||||| |||||||||||||| ||| ||||| || || |||| |||| |
Sbjct 87335 CATACATGCTGTACAAAGACGCCTGCAACAGGAAGAGCAACCAGCAGAACCTGGGCACCA 87394
Query 104988 TCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTG 105047
|||| | ||| ||||| ||||||||| | |||| || | | |||||| || |
Sbjct 87395 TCAAATGCAGCAACCTCTGCACAGAAATCGTTGAATACACCAGCGAGGATGAGGTAGCGG 87454
Query 105048 TGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGACATTTG 105107
| ||||| || || || ||||||||| || |||||| || || | ||| ||||
Sbjct 87455 TCTGTAATCTGGCCTCCATCGCTCTCAACATGTATGTCACACCTGA---ACGGACTTTTG 87511
Query 105108 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTG 105167
| | | |||| || | || || ||| || ||||||||| |||| | || |
Sbjct 87512 ACTTTAAAAAGCTGGCGTATGTGACCAAAGTAATCGTCAAAAACCTGAACAAGATCATAG 87571
Query 105168 ATAGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAA 105224
| | || | || || || ||| || || || || | | | ||| | ||||
Sbjct 87572 ACATTAACTACTATCCGGTGCCTGA---AGCAGAGAAGTCCAACAAGCGCCACAGGCCAA 87628
Query 105225 TTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATT 105284
| || ||||||| |||||| | || |||| ||||| || || || | |||||
Sbjct 87629 TAGGAATCGGTGTGCAGGGTTTGGCTGATGCCTTCATCCTGATGCGTTACCCCTTTGAAA 87688
Query 105285 CCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTG 105344
| ||| || || | || | | || ||||||||||| || ||||||| || |
Sbjct 87689 GTGCCGAGGCTCAGCTGCTGAACACCCAGATCTTTGAGACCATCTACTACGCCGCCCTGG 87748
Query 105345 AGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAG 105404
||||||| | ||| |||| | | || || || || || | | || || || |
Sbjct 87749 AGGCGAGCTGCGAGCTGGCTGCCGAGCTCGGCCCCTACGAGACATACCAAGGCTCCCCCG 87808
Query 105405 -CTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA-GACCAAGCTTCACTACGA 105462
| || |||| | || || | || ||||||| || || | ||| | | ||
Sbjct 87809 TCAGCA-AAGGCATCCTCCAGTACGACATGTGGG-AGAAGACGCCCACTGACCTGTGGGA 87866
Query 105463 CTGGGAAGCT-CTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGG 105521
|| ||||||| || ||||| ||| | | || | | ||||| || || |||
Sbjct 87867 CT-GGAAGCTCCTGAAGGAGAAGATCGCCAAACACGGAGTCAGGAACAGCCTGCTGCTGG 87925
Query 105522 CTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCT 105581
| || ||||| || ||||||||||| || ||| |||| || || || | | | || |||
Sbjct 87926 CCCCGATGCCCACGGCCTCCACCGCCCAGATCCTGGGCAACAACGAGTCCATCGAGGCCT 87985
Query 105582 ACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGC 105641
|||| | |||||||| | || |||| | |||||||| ||| || || |
Sbjct 87986 ACACCAGCAACATCTACACCCGCAGGGTCCTCTCTGGAGAGTTCCAGATCGTGAATCCTC 88045
Query 105642 ATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 105691
|||| | | ||| | | ||||| || || ||| |||| ||||||
Sbjct 88046 ATCTGCTCAAAGACTTGACAGAGAGAGGACTGTGGAGTGAGGAGATGAAG 88095
>seq2122
Length=1387681
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863
|||||| | | || ||||| ||| ||||| |||||||||||||| || ||| ||
Sbjct 1083500 GAGCGAATTGTGGCTTTTGCAGCTGTGGAGGGAATCTTCTTCTCTGGCTCATTCGCTGCC 1083559
Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923
|| ||||||||||||||| |||| || ||||| || || || ||||| ||||| |||
Sbjct 1083560 ATCTATTGGCTCAAGAAGAGAGGCCTAATGCCCGGGCTTACCTATTCCAATGAGCTGATC 1083619
Query 94924 TCTCGTGACGAGG 94936
| | || ||||
Sbjct 1083620 AGTAGGGATGAGG 1083632
>seq963
Length=229635
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875
|| ||||| ||| ||||| ||||||||||||||||| ||| || || | |||||
Sbjct 212581 GCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTG 212640
Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935
|||||| |||| || ||||| || || ||||||||||||||| ||| | ||||||
Sbjct 212641 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 212700
Query 94936 G 94936
|
Sbjct 212701 G 212701
>seq375
Length=30079
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875
|| ||||| ||| ||||| ||||||||||||||||| ||| || || | |||||
Sbjct 25795 GCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTG 25736
Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935
|||||| |||| || ||||| || || ||||||||||||||| ||| | ||||||
Sbjct 25735 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 25676
Query 94936 G 94936
|
Sbjct 25675 G 25675
>seq52
Length=1057507
Score = 87.8 bits (96), Expect = 2e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875
|| ||||| ||| ||||| ||||||||||||||||| ||| || || | |||||
Sbjct 14066 GCCTTTGCCGCTGTGGAGGGAATCTTCTTCTCTGGTTCGTTCGCTGCGATCTTCTGGCTG 14007
Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935
|||||| |||| || ||||| || || ||||||||||||||| ||| | ||||||
Sbjct 14006 AAGAAGAGAGGCCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGAGACGAG 13947
Query 94936 G 94936
|
Sbjct 13946 G 13946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583233036785920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |