Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2387 203 4e-47 seq33 86.0 7e-12 seq963 84.2 2e-11 seq375 84.2 2e-11 seq52 84.2 2e-11 >seq2387 Length=643009 Score = 203 bits (224), Expect = 4e-47 Identities = 474/704 (67%), Gaps = 16/704 (2%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| | || || || ||||| ||||| || || || ||| || Sbjct 86713 AAGTGGTTCACCCACGCCTCTCCTACACTCTTCAATGCTGGAACCAACAGGCCACAGCTG 86772 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || |||||||| ||| ||||| ||||| || || ||||| Sbjct 86773 TCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATTTATGACACGCTG 86832 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCA---CTGCTCGAAC 53443 ||| |||| |||| ||||||||| | | | || || ||||| | | ||| | Sbjct 86833 AAGCAGTGCGCCCTCATCTCCAAATCGGCCGGAGGAATCGGCGTGGCGGTCAGCTGCA-- 86890 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 || | ||| || | || || || || ||| || | || | || || Sbjct 86891 -TCAGATCGACGGGGAGCTACATTGCCGGAACCAATGGCAATTCCAACGGGCTGGTCCCC 86949 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAG 53563 ||||| | || | ||||||||||||||| |||||| |||||||||| ||| | Sbjct 86950 ATGCTGAGAGTTTACAACAACACGGCCCGTTACGTCGACCAGGGTGGCAACAAGAGACCC 87009 Query 53564 GGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG 53623 || | |||||||| ||||| ||||| |||||| ||| || | || || || |||||| Sbjct 87010 GGAGCCTTCGCCATGTACCTGGAGCCATGGCACTTTGACGTTTTCGACTTCCTGGAGCTG 87069 Query 53624 CGTCTGAA-TCAGGGTGACGAAGAG--ATGCGCTGCCGTGACCTGTT-TACAGCTCTGTG 53679 ||| ||||| | || ||| | | || | | || || || ||| || ||||| Sbjct 87070 AAGAAGAACACAGGG-AAGGAGGAGCAAAGAGC--CAGAGATCTTTTCTAC-GCCCTGTG 87125 Query 53680 GATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCC 53739 ||| || ||| | |||||| | | |||||||| || | || |||| ||||||||| || Sbjct 87126 GATCCCCGACTTGTTCATGAAGAGGGTGGAGAGCAACCAAGACTGGTCCCTGATGTGTCC 87185 Query 53740 GAACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGA 53798 ||||||||||||||| || | | ||| || || |||||||| | ||| | || | Sbjct 87186 GAACGAGTGCCCCGGGCTGGACGAGTG-CTGGGGAGAGGAGTTCGAGGAGCTCTACACCA 87244 Query 53799 CGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAA 53858 |||| |||| | |||| ||| ||||| | || | ||| | || | Sbjct 87245 AATACGAGAAGGAGGGGAGGGTCAAGCGAGTGGTGAAGGCTCAGCAGCTGTGGTACGCCA 87304 Query 53859 TCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACG 53918 | || || |||| || || || || || |||||| ||||| || | |||| Sbjct 87305 TTATCGAGTCCCAGACAGAAACCGGTACACCATACATGCTGTACAAAGACGCCTGCAACA 87364 Query 53919 AGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||||||||| ||||| | ||| |||||||| |||||| Sbjct 87365 GGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATGCAGCAAC 87408 >seq33 Length=2353240 Score = 86.0 bits (94), Expect = 7e-12 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG- 152087 |||||||||||||| | ||||| | ||||||||||| || || ||||||||||| Sbjct 241674 GTGAAGATGTATCGAGGACTGGCAGAGTCCTTGCCACCATGCAACCTGGTTCCAAACTGA 241615 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 ||||| |||| || ||||| | ||||||| ||||| || ||||| |||||| || Sbjct 241614 CCCAGA-GGCTGAAGCAGGTTCAAGTTGTTGCTTCCCACAAAGTTCTGGGCCAAACCAAC 241556 Query 152148 AATCGT 152153 ||| || Sbjct 241555 AATAGT 241550 >seq963 Length=229635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 213939 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 213880 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAAT 74551 ||||||| ||||||| | | | ||| || Sbjct 213879 AAGTCGAAGGGGTTCTCTACCCGGTAGAT 213851 >seq375 Length=30079 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 24461 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 24520 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAAT 74551 ||||||| ||||||| | | | ||| || Sbjct 24521 AAGTCGAAGGGGTTCTCTACCCGGTAGAT 24549 >seq52 Length=1057507 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || |||||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 12941 TACTCGCCCACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 13000 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAAT 74551 ||||||| ||||||| | | | ||| || Sbjct 13001 AAGTCGAAGGGGTTCTCTACCCGGTAGAT 13029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547189952518400