Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq10 165 1e-35 >seq10 Length=14175190 Score = 165 bits (182), Expect = 1e-35 Identities = 425/638 (67%), Gaps = 16/638 (3%) Strand=Plus/Minus Query 13692 GAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTCGAGCGCCTC 13751 || |||||||| |||||||| || |||||||| | ||||| |||||||| ||||| || Sbjct 383119 GACTTTCCCATAGCCTACTCCATGGTGATCCATGAGAAGATTGAGATGTTTGAGCGACTT 383060 Query 13752 CTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCCAAGTCCGGC 13811 || | || | ||||| || |||||| |||||||||| ||||||||| |||||| Sbjct 383059 CTACGAGCTGTTTACGCTCCTCAGAACATCTACTGCGTGCACGTGGACCAAAAGTCCACA 383000 Query 13812 GACGAGTTCATCCG--GGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACGTGGCCCTGG 13869 | || || || | || ||| ||| || | || || || || ||| | | Sbjct 382999 AAAGACTT--TCAGAAGGCCGTGGAGGCTATTGTGTCATGTTTTCCCAATGTGTTTATAG 382942 Query 13870 CCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCGACCTCAGCT 13929 || || | |||||||||| ||| ||| || || ||||| || || | || Sbjct 382941 CCACTAAATTGGAAAGGGTGGTGTACGCCTCGTGGTCCCGAGTACAGGCAGATCTGAACT 382882 Query 13930 GCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACCTGTGCGGGA 13989 ||||| || ||| | ||| | ||| ||||||||||||||||||| || |||| Sbjct 382881 GCATGAAAGATCTGCTCAACTCGCATGTCCGGTGGAGGTACCTGCTCAACACCTGTGGGA 382822 Query 13990 TGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCCTGGGCGGCA 14049 |||||||| |||| ||||| |||||| || | | ||||||||||| ||| | Sbjct 382821 CAGACTTCCCCATCAAAACCAATGGGGAGATGGTTAAGACACTGAAGGCCCTAAACGGGA 382762 Query 14050 AGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTGCACCGCATCAGGAAGAGGC 14109 ||| | |||||| ||||| || ||||| | | | | || | || || | Sbjct 382761 GAAACAGCATGGAGACCGAGGCCA---CCAACAGCTACAAGAAAGGCCGCTGGCAGTATC 382705 Query 14110 ACGTGGTGGCCAGCGGCGGCGTGGT--GGTCAACACCGGCAGGAACAAGGCCCCGCCGCC 14167 || | || || | | || | || || | | ||||| ||| ||| || || Sbjct 382704 ACCACAACGTCACCGACAGTGTCATCCGGACA--AATGTGAGGAA-AAG--CCCCCCACC 382650 Query 14168 GCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCGGGAGTTCGTGGA 14227 |||| | |||||| || |||| || || ||||||| |||||| | | || ||| | Sbjct 382649 AATCAGCAGCCCCATGTTCTCGGGGAATGCCTACTTTGTGGTCACGAGAGCATTTGTGAA 382590 Query 14228 CTTCGTCCTCAAGGAC-GAGCCGGTGGCCCTGCTCATGCACTGGTTCGAGGACACGTACA 14286 ||| | | |||| ||| ||| ||| || | ||| ||||||| |||| Sbjct 382589 ACACGTGATGACGGACAGAG-AGGTTCAGAAACTCCTGGAGTGGGAGAAGGACACATACA 382531 Query 14287 GCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATG 14324 |||||||||||||| |||||||||| ||||||| ||| Sbjct 382530 GCCCCGACGAGCACTTGTGGGCCACTCTGCAGAGGATG 382493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658707844014080