Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lates_20calcarifer_20[refseq_20GCF_5F001640805.1_202016-05-09] 3,808 sequences; 668,481,366 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1756 156 3e-33 seq3402 100 2e-16 >seq1756 Length=808860 Score = 156 bits (172), Expect = 3e-33 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || | |||||||||||| || || || Sbjct 97650 AGGCCTGTGATGTGGGCGATCATGTAGGTAAGAAGTGCGTAGCTGGCGATATTGAAAGGC 97591 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||||| |||||| ||||||||||| ||||| || || | | Sbjct 97590 ACTCCCAGACCCATGTCGCCCGACCGCTGGTACAGCTGACACGACAGCTCACCATCACAC 97531 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| ||||| || | ||||||||| || || |||||||||||| || |||| Sbjct 97530 ACGTAGAACTGGCAGAGGGCGTGGCAGGGGGGCAGAGCCATGAGGGGCAGGTCT 97477 Score = 154 bits (170), Expect = 1e-32 Identities = 140/175 (80%), Gaps = 1/175 (1%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||||| ||||||||||| ||||| |||||||||||||| |||||||| ||||||||||| Sbjct 97169 CATGTTTGTGTACTCTGCCCCGAAGTGCCTCCACTGGAAACCGTACACAGGTCCCAGGTC 97110 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 ||||| || |||| | ||| || ||||||| || || | ||| |||||||| || Sbjct 97109 GCCCTCCTCTCTGTCCGTGAACCCAAGGTTGTCCAGGAAATCCCGGGACCCGTTGGCATC 97050 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGA-CCCTCTGAC 30396 ||| ||||| ||||| ||| | |||||||| |||| ||||| || |||| |||| Sbjct 97049 CCAAATCTTCACCCCTTTCGCTGAGAGCTCCTTGGCATTTGTTGATCCCTGTGAC 96995 >seq3402 Length=17327306 Score = 100 bits (110), Expect = 2e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 110159 ACTCTGGCAGTAGACGATATCTCTCTAGACTTTTCTCTGGGAGAAAAGTGTCGCACGCAA 110218 || ||||||||||||||||| | ||| |||| | || ||||| |||||||| ||| ||| Sbjct 1304102 ACCCTGGCAGTAGACGATATTTGTCTGGACTGATTTCAGGGAGGAAAGTGTCACACTCAA 1304161 Query 110219 ATTGCGTCGACACGTGAGTGACAAACAGCCTCTTTATCCCCGGGCTCTCCATGAGCTCCC 110278 | ||| || | | ||||||||||| ||| | |||||||||||||||| | |||| Sbjct 1304162 ACTGCTTCAGGATTCGCGTGACAAACAGTCTCCTGCTCCCCGGGCTCTCCATCAACTCCT 1304221 Query 110279 CGTAG 110283 |||| Sbjct 1304222 GGTAG 1304226 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406291543134336